PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G254800.1.p
Common NameGLYMA_19G254800, LOC100790050
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 363aa    MW: 41242.5 Da    PI: 5.979
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G254800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.51.3e-28128189159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK++  ++fpr+YYrCt++   gC ++k+v+rs+edp+++e+tY+g+H+++
  Glyma.19G254800.1.p 128 LDDGYSWRKYGQKDILRAKFPRGYYRCTHRnvqGCLATKQVQRSDEDPTTIEVTYRGRHTCT 189
                          59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-27121190IPR003657WRKY domain
PROSITE profilePS5081122.286123186IPR003657WRKY domain
SuperFamilySSF1182904.32E-25127190IPR003657WRKY domain
SMARTSM007741.2E-39128190IPR003657WRKY domain
PfamPF031062.8E-26129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEESTKRKHT SLIHELIQGK ELTKQLSNHL VSSSPMSHQT NELFVEKILL SYEKALTMLN  60
WGSIMGEAKT TSGNIMDSHC SFTNGGSPRS EVVDRELEHK AALKKRKTMP RWTEQVKICS  120
RRGLEGSLDD GYSWRKYGQK DILRAKFPRG YYRCTHRNVQ GCLATKQVQR SDEDPTTIEV  180
TYRGRHTCTQ AKHLNKAFPS NIKACLGENQ FQKNQPLLEK IQQQTPEVIF TFETELKVKT  240
EELETKEDIF PWFSFPSPSI GSENEDNMLP ETMFENHFME SFSPVFLSPA TSESNPFCLS  300
AYHLDSTGLL CQNIQTSESD ITEIVSAPTS VTKSPILDLD ILLDKGDFDT DFPFNIPEFF  360
SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20127188768OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.252340.0root
Gma.275160.0epicotyl| flower| hypocotyl| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G254800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195790.0EU019579.1 Glycine max WRKY43 (WRKY43) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554762.10.0probable WRKY transcription factor 53
RefseqXP_028218160.10.0probable WRKY transcription factor 53
TrEMBLA0A445FLI80.0A0A445FLI8_GLYSO; Putative WRKY transcription factor 41
TrEMBLI1NCK20.0I1NCK2_SOYBN; Uncharacterized protein
STRINGGLYMA19G44380.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-49WRKY family protein