PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.20G001600.1.p

Common Name

GLYMA_20G001600, LOC100782271

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TCP

Protein Properties

Length: 233aa MW: 25116.1 Da PI: 10.1484

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G001600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.9	7.5e-38	35	110	2	77
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaes 77 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ ++ Glyma.20G001600.1.p 35 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSD 110 78**************************************************************999997772222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.2E-31	41	111	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	41	95	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MSNSHGATNA VTTTNHSNNN TVVDHHQQPT TTALAVKKPP SKDRHSKVDG RGRRIRMPII 60 CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTVSD HKPLLPPPTP 120 FILGKRIRPD DDNSAKDDTV SLVVPPTPPS LWALPPRPDF GQVWSFAAPE LVSVSPQNSL 180 FHHHHHHHHQ QAAMGEASAA RLGNYLPGHL NLLASLSGGG HGNSGRRDDE PR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.21540	0.0	hypocotyl\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G001600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006605414.1	1e-170	transcription factor TCP7
Refseq	XP_028219790.1	1e-170	transcription factor TCP7-like
Swissprot	Q9FMX2	2e-86	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0R0EGN5	1e-168	A0A0R0EGN5_SOYBN; Uncharacterized protein
TrEMBL	A0A445EYY8	1e-168	A0A445EYY8_GLYSO; Transcription factor TCP7
STRING	GLYMA09G42140.2	1e-125	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53
Representative plant	OGRP8514	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-63	TCP family protein

Link Out ? help Back to Top
Phytozome	Glyma.20G001600.1.p
Entrez Gene	100782271