PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G026600.1.p
Common NameGLYMA_20G026600, LOC100817538
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 532aa    MW: 59649.6 Da    PI: 9.5239
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G026600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00077729123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C++C+ksF+   +L  HirtH
  Glyma.20G026600.1.p  7 YVCKYCSKSFPCGKSLGGHIRTH 29
                         9**********999999999998 PP
2zf-C2H211.30.0011478500123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C k F++   L  H r+H
  Glyma.20G026600.1.p 478 HECPICYKIFKSGQALGGHKRSH 500
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.83E-9529No hitNo description
Gene3DG3DSA:3.30.160.607.3E-5529IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.72734IPR007087Zinc finger, C2H2
SMARTSM003550.057729IPR015880Zinc finger, C2H2-like
PfamPF139128.2E-7730IPR007087Zinc finger, C2H2
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
SuperFamilySSF576671.83E-9118145No hitNo description
PROSITE profilePS501579.723123150IPR007087Zinc finger, C2H2
SMARTSM003550.14123145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
PfamPF139124.4E-7125147IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078478500IPR007087Zinc finger, C2H2
SMARTSM003550.24478500IPR015880Zinc finger, C2H2-like
PfamPF139127.1E-11478500IPR007087Zinc finger, C2H2
PROSITE patternPS000280480500IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MEERKKYVCK YCSKSFPCGK SLGGHIRTHM MTEERNNNNN VNVVVDGADD KDNINRFIKL  60
GGTVMRNNNN KKRDLSWCED SNNNPIYGLR ENPKKTMRFV HSSGGAANAN NNEQQQQNKE  120
DKRFCKECGK GFPSLKALCG HMACHSEKEK RTTATTTIKF EEKLVRDSHS DTETSTHPRR  180
SKRMRVKKTI KLSNHNNPFS FSSSPSSSGV VPLVNNGSSP VSEVEQEEQE EVARCLMLLS  240
RDSGSFNFKS GRFASVTEFS DNNSVILEAK SSSPDTLIGV ISYGNNNNNN NFVSNNNHAY  300
DLVEKKLLKV KNIKFKSVEF GASDNYSGAR VFRYGPKTKM VDSDFSNDEL KRSKLGDKSS  360
KYTASVVKKL VMEDLDYDRT YGGTTRKFDS RKRGNYDLVD VSSKNGTKGW KYECFEGERD  420
NNSSYEYSID DESDENSSET ESFPAPGSHH KSKALNGKKC TTNAKKKKLK PSKKSKDHEC  480
PICYKIFKSG QALGGHKRSH FIGGSEENTV LIKQVVPNFL IDLNLPAPVD E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G026600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556695.10.0ras guanine nucleotide exchange factor Q
TrEMBLK7N0Z70.0K7N0Z7_SOYBN; Uncharacterized protein
STRINGGLYMA20G03240.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Representative plantOGRP5450716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.16e-37C2H2-like zinc finger protein