PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G032700.1.p
Common NameGLYMA_20G032700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 216aa    MW: 23805.7 Da    PI: 6.5323
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G032700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.52.8e-13105149448
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                           kr rr+ +NRe+ r sR+RK+  + eL + v +L +eN++L k+
  Glyma.20G032700.1.p 105 AKRVRRMLSNRESDRCSRRRKQTHLTELGTQVSQLRSENSSLLKR 149
                          79***************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-9102166IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.209104149IPR004827Basic-leucine zipper domain
PfamPF001701.8E-11105149IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.76E-9106150No hitNo description
CDDcd147023.22E-16107158No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-9107176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MVVTALWVEH NDDIGMPIDV ALGSLVKSQN PATFPDRSGP FGNDPSKLQN KDVRAHIGIP  60
SSPSMQNKPI VAIRPTTSGS SGEQPDDEEV EGEINKTKNM TPVDAKRVRR MLSNRESDRC  120
SRRRKQTHLT ELGTQVSQLR SENSSLLKRF IDVSPKYNNV AIDNRVLKVD VETLRVKDSV  180
KTASTEISSE VIIETFHNDD EALAASNDKV VDKTI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.414471e-179cotyledon| flower
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G032700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932531e-106BT093253.1 Soybean clone JCVI-FLGm-24C5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014627899.11e-104light-inducible protein CPRF2
SwissprotQ990901e-31CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A0R0EGQ11e-155A0A0R0EGQ1_SOYBN; Uncharacterized protein
STRINGGLYMA20G04195.13e-97(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41763358
Representative plantOGRP18391639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.17e-29basic leucine zipper 9
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]