PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G033300.1.p
Common NameGLYMA_20G033300, LOC100785110
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 281aa    MW: 32132.6 Da    PI: 8.2504
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G033300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.14.7e-55101351128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+v+yL++++++k++++ ++i+evd+yk++Pw+Lp k++ +e+ewyfF++rd+ky++g r+nrat sgyWkatg+dk
  Glyma.20G033300.1.p  10 LPPGFRFHPTDEELIVYYLCNQATSKPCPA-SIIPEVDLYKFDPWELPDKTEFGENEWYFFTPRDRKYPNGVRPNRATVSGYWKATGTDK 98 
                          79****************************.89***************99999************************************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s ++++vg+kk+Lvfykgr pkg ktdW+mheyrl
  Glyma.20G033300.1.p  99 AIYS-GSKHVGVKKSLVFYKGRPPKGAKTDWIMHEYRL 135
                          ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-657162IPR003441NAC domain
PROSITE profilePS5100560.84510162IPR003441NAC domain
PfamPF023654.3E-2711135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEGGTTSSEL PPGFRFHPTD EELIVYYLCN QATSKPCPAS IIPEVDLYKF DPWELPDKTE  60
FGENEWYFFT PRDRKYPNGV RPNRATVSGY WKATGTDKAI YSGSKHVGVK KSLVFYKGRP  120
PKGAKTDWIM HEYRLAESKI PSSRKIGSMR LDDWVLCRIY KKKSMVKALE HKEAQPKVQI  180
ANLAAANQDV EQKMMNLPRT WSLAYLLDMN YLGPILSDGS YCPTLDFQIN NANIEFDPFV  240
KSQPVEMNYN YEADSGKYQV KQSSTIDQPI YVKQMYDLLG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-73616413167NO APICAL MERISTEM PROTEIN
1ut4_B4e-73616413167NO APICAL MERISTEM PROTEIN
1ut7_A4e-73616413167NO APICAL MERISTEM PROTEIN
1ut7_B4e-73616413167NO APICAL MERISTEM PROTEIN
3swm_A5e-73616416170NAC domain-containing protein 19
3swm_B5e-73616416170NAC domain-containing protein 19
3swm_C5e-73616416170NAC domain-containing protein 19
3swm_D5e-73616416170NAC domain-containing protein 19
3swp_A5e-73616416170NAC domain-containing protein 19
3swp_B5e-73616416170NAC domain-containing protein 19
3swp_C5e-73616416170NAC domain-containing protein 19
3swp_D5e-73616416170NAC domain-containing protein 19
4dul_A4e-73616413167NAC domain-containing protein 19
4dul_B4e-73616413167NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.213540.0hypocotyl| root| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G033300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4403560.0EU440356.1 Glycine max transcriptional factor NAC51 (NAC51) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556789.10.0NAC transcription factor 29
RefseqXP_028221127.10.0NAC domain-containing protein 2-like
SwissprotK4BNG71e-112NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A0B2QYE00.0A0A0B2QYE0_GLYSO; NAC domain-containing protein 29
TrEMBLA0A0R0EG060.0A0A0R0EG06_SOYBN; Uncharacterized protein
STRINGGLYMA20G04400.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-111NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]