PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G034000.1.p
Common NameGLYMA_20G034000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 371aa    MW: 42211.7 Da    PI: 7.2962
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G034000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF611.4e-191660145
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         kr en+  r  t++kRrngi+KKA ELS+LCd+++ +++f+++gk
  Glyma.20G034000.1.p 16 KRLENTNGRPATYAKRRNGIMKKAAELSILCDIDIILLMFAPNGK 60
                         6899***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.988860IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-25867IPR002100Transcription factor, MADS-box
CDDcd001202.96E-22961No hitNo description
SuperFamilySSF554553.79E-239102IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-151030IPR002100Transcription factor, MADS-box
PfamPF003191.2E-161861IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-153045IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-154566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MVHVSCMMGR VKLKIKRLEN TNGRPATYAK RRNGIMKKAA ELSILCDIDI ILLMFAPNGK  60
PSLCRGRCSN FEEVITKFGQ LTPQERTKRK LETLEALKKT FKKLDHDVNV QEFFGTSSQT  120
IEGRCYVSLT DIGQDLSNQA KLLQTQIFGT HKRLSHWTEF DKINSVDQLG RMENSLRESL  180
DQIRTHKENV KKQQQLVSLQ CNNQLNEMNI PFRMTAQQLQ PLSWIVNDND QNIVLPEDSN  240
MFLHKDVEGS VSSSFGSYDN YFGSSIKTDM SSSTQENGVL SDMSNIAPMR LQLNGQFPCL  300
QYNFNLLNNL KFQPSVEINP HENHVDYHVN EGFEAPRSSY DSNNHHGWAS TSGSCGITMF  360
EEQLYAQQPN *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G034000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1449484e-92BT144948.1 Lotus japonicus clone JCVI-FLLj-14K19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028221501.10.0agamous-like MADS-box protein AGL30
SwissprotQ1PFA48e-98AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A0R0E7230.0A0A0R0E723_SOYBN; Uncharacterized protein
STRINGGLYMA20G04500.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Representative plantOGRP59461119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.22e-88AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]