PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G034000.2.p
Common NameGLYMA_20G034000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 362aa    MW: 41185.6 Da    PI: 7.7873
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G034000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF611.4e-191761145
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         kr en+  r  t++kRrngi+KKA ELS+LCd+++ +++f+++gk
  Glyma.20G034000.2.p 17 KRLENTNGRPATYAKRRNGIMKKAAELSILCDIDIILLMFAPNGK 61
                         6899***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-25968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.988961IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-2310103IPR002100Transcription factor, MADS-box
CDDcd001202.65E-221062No hitNo description
PRINTSPR004041.2E-151131IPR002100Transcription factor, MADS-box
PfamPF003191.2E-161962IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-153146IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-154667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MHVYVMCRMG RVKLKIKRLE NTNGRPATYA KRRNGIMKKA AELSILCDID IILLMFAPNG  60
KPSLCRGRCS NFEEVITKFG QLTPQERTKR KLETLEALKK TFKKLDHDVN VQEFFGTSSQ  120
TIEGRCYVSL TDIGQDLSNQ AKLLQTQIFG THKRLSVDQL GRMENSLRES LDQIRTHKEN  180
VKKQQQLVSL QCNNQLNEMN IPFRMTAQQL QPLSWIVNDN DQNIVLPEDS NMFLHKDVEG  240
SVSSSFGSYD NYFGSSIKTD MSSSTQENGV LSDMSNIAPM RLQLNGQFPC LQYNFNLLNN  300
LKFQPSVEIN PHENHVDYHV NEGFEAPRSS YDSNNHHGWA STSGSCGITM FEEQLYAQQP  360
N*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G034000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1449481e-92BT144948.1 Lotus japonicus clone JCVI-FLLj-14K19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025983386.10.0agamous-like MADS-box protein AGL30
SwissprotQ1PFA49e-89AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A0R0EGR20.0A0A0R0EGR2_SOYBN; Uncharacterized protein
STRINGGLYMA20G04500.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.22e-79AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]