PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G035700.1.p
Common NameGLYMA_20G035700, LOC106797573
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 378aa    MW: 42642.6 Da    PI: 6.2764
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G035700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.9e-15160257297
                          EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                           k+l +sdv+ +gr+vlpk+ ae+    + k+e++ ++l+d  s  +W++k++y  ++ks++y+l ++  +Fv+  +L++gDf++++  +
  Glyma.20G035700.1.p 160 TKKLNKSDVGVLGRIVLPKREAEDKlpTLWKKEGINIVLKDvYSEIEWSIKYKYwtNNKSRMYIL-DNIGDFVNHYKLQAGDFITLY--K 246
                          58999*****************999**77777999******7788*******9985555555555.5********************..5 PP

                          SSEE..EEEEE CS
                   B3  87 rsefelvvkvf 97 
                          ++ ++l+v+++
  Glyma.20G035700.1.p 247 DELKNLYVSAR 257
                          67777788776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-23153269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.07E-18158256IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-20158254No hitNo description
PROSITE profilePS508639.248159260IPR003340B3 DNA binding domain
SMARTSM010198.8E-13159260IPR003340B3 DNA binding domain
PfamPF023625.6E-11161257IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MENFFVPFFK KNPNPSITTT GGSGSSSSNQ TSLVQPSTYP QNFPYNTSEK LNFPEQPYFI  60
PLYPFPTGQV SFSNQPYGMP NSELQGSRAC MTKATRERWR QVRQRSKNST PVAPNSILEG  120
TTREQFVPNG GSNVRITVKQ HNATKFFNTP NGKKLEEILT KKLNKSDVGV LGRIVLPKRE  180
AEDKLPTLWK KEGINIVLKD VYSEIEWSIK YKYWTNNKSR MYILDNIGDF VNHYKLQAGD  240
FITLYKDELK NLYVSARKDH ENLEESKSSS NTGMSHEPDA YLAYLTKELG HKGKAEAANN  300
LLNNVEEEAP YQANQLHQFM PMNNIVGEGA SNQAIQEAAP AAPVNVDQEN KVVDDDDDDI  360
YGGLDNIFEI GNTYQIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A2e-341482552109B3 domain-containing transcription factor LEC2
6j9c_D2e-341482552109B3 domain-containing transcription factor LEC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G035700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014627882.10.0B3 domain-containing transcription factor LEC2
TrEMBLA0A0R0E6M10.0A0A0R0E6M1_SOYBN; Uncharacterized protein
STRINGGLYMA20G04761.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.13e-38B3 family protein