PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G036500.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 186aa    MW: 19653.1 Da    PI: 9.1436
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G036500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.31e-3463121360
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 
                           v YkeClkNhAas+Ggha+DGCgEfmps+++  +++++lkCaACgCHRnFHRre++e+
  Glyma.20G036500.1.p  63 VVSYKECLKNHAASIGGHALDGCGEFMPSSSTVpSDPRSLKCAACGCHRNFHRREPQEN 121
                          689**************************98889*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.5E-3064118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2364120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.5E-3266117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.36666117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDLTSSTTHN TNTTQTLEAA NTITITTKAT PPIPTTTLKS LSFTNGTLKR HPITTVAPPP  60
SMVVSYKECL KNHAASIGGH ALDGCGEFMP SSSTVPSDPR SLKCAACGCH RNFHRREPQE  120
NNLNNNLKNN NPTFLNCIYS TPSAPAPLSH RAMSQSTSPS LSSSPSHSPS PISSPSPPPL  180
SHLVR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.225870.0cotyledon| hypocotyl| leaf| root| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G036500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606671.11e-127zinc-finger homeodomain protein 10, partial
RefseqXP_028220806.11e-126zinc-finger homeodomain protein 11-like
SwissprotQ9LXG02e-28ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A368UJC41e-128A0A368UJC4_SOYBN; Uncharacterized protein
STRINGGLYMA20G04880.21e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.16e-29zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]