PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G068900.1.p
Common NameGLYMA_20G068900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 186aa    MW: 21742.6 Da    PI: 6.7078
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G068900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-0996139447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          WT+eE+  ++ + +++   +W++I++++   +t+ q++s+  ++
  Glyma.20G068900.1.p  96 WTKEEHRSFLLGLEEYKESRWEKISEKFVPSKTPTQVVSHAKNF 139
                          *****************************9**********9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.10188144IPR017930Myb domain
SuperFamilySSF466892.99E-1289143IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-991141IPR006447Myb domain, plants
SMARTSM007176.2E-792142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-895138IPR009057Homeodomain-like
PfamPF002491.9E-796138IPR001005SANT/Myb domain
CDDcd001672.43E-896140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MYDYHFDEEE IEELLKHKDE PCLNVILDSL DLQQMVLASQ VPTKPLEETF YSIASKQVHV  60
PSSYPHHLLS QNTESNHVML SSGSSQSIHS KKYIHWTKEE HRSFLLGLEE YKESRWEKIS  120
EKFVPSKTPT QVVSHAKNFF KWKNAPKKER KRRSIHETTL DDIDMIVTPH IDQHNWLPPP  180
PNFAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G068900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606790.11e-107transcription factor DIVARICATA
TrEMBLA0A0R0E9021e-133A0A0R0E902_SOYBN; Uncharacterized protein
STRINGGLYMA08G45255.17e-53(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13860414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.23e-20MYB family protein