PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G070100.1.p
Common NameGLYMA_20G070100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 210aa    MW: 23854 Da    PI: 8.0974
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G070100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-18113163255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp+     +r++lg+f+++ +Aaka++ a+ k++g
  Glyma.20G070100.1.p 113 RYRGVRRRP-WGKFAAEIRDPTRK--GTRVWLGTFDSEIDAAKAYDCAAFKMRG 163
                          8********.**********8542..4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.20E-30112171No hitNo description
PfamPF008476.2E-13113163IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22113173IPR016177DNA-binding domain
SMARTSM003801.8E-35113177IPR001471AP2/ERF domain
PROSITE profilePS5103224.316113171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-31113172IPR001471AP2/ERF domain
PRINTSPR003673.9E-13114125IPR001471AP2/ERF domain
PRINTSPR003673.9E-13153173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MTTAEETSNL DLIRQHLLGE NIISDSSFFS NLLHHPMKLE APSSPEFDFT SYISDNTSFF  60
TFLEGYDLMA DMKFVDSDNT IPSKEVKKCN ISPEPLVSSK EKPKKLEYDK AKRYRGVRRR  120
PWGKFAAEIR DPTRKGTRVW LGTFDSEIDA AKAYDCAAFK MRGQKAILNF PLEAGLSDPK  180
PNSCGRKRRR ESHDHELELP QVQVHHGVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27110172264ATERF1
3gcc_A1e-27110172264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185189RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.167000.0cotyledon| leaf| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G070100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0894820.0BT089482.1 Soybean clone JCVI-FLGm-2G11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235847.21e-156DNA-binding domain-containing protein
RefseqXP_028220065.11e-156ethylene-responsive transcription factor ERF107-like
TrEMBLA0A0B2RHZ01e-155A0A0B2RHZ0_GLYSO; Ethylene-responsive transcription factor ERF106 (Fragment)
TrEMBLA0A445F1S81e-155A0A445F1S8_GLYSO; Ethylene-responsive transcription factor ERF106
TrEMBLI1NEC91e-155I1NEC9_SOYBN; Uncharacterized protein
STRINGGLYMA20G16920.11e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-42ERF family protein