PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G075800.1.p
Common NameGLYMA_20G075800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 213aa    MW: 24083.4 Da    PI: 7.9443
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G075800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer77.61.7e-2459113358
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                          + +Y+eClkNh +++G+h++DGC  f+p  g+egt +alkC  C+ HRnFHR+e+ 
  Glyma.20G075800.1.p  59 NEKYHECLKNHTVKIGSHTLDGCIKFLPL-GKEGTLDALKCIVCNYHRNFHRKETP 113
                          679*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-1661112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.6E-2461112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-2161111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.61862111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.97E-13154210IPR009057Homeodomain-like
TIGRFAMsTIGR015652.4E-20154205IPR006455Homeodomain, ZF-HD class
Gene3DG3DSA:1.10.10.601.7E-22155211IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEFKQHVETE LRMPVASASH EDFGIPPSSQ GEEEPVAAAI PVAIPMTPTP PTMSQNNNNE  60
KYHECLKNHT VKIGSHTLDG CIKFLPLGKE GTLDALKCIV CNYHRNFHRK ETPNDTYPES  120
YHHHPPLPFT AYYRAPVGYP HVQGQQCTTL ALPSRFTQEQ KEKMLAFGEK LGWRIHKHNE  180
SVVQEFCAQT SVQPHVLKVW MHNNKHTLGK KS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-221482071675ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G075800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351411e-154AC235141.1 Glycine max strain Williams 82 clone GM_WBa0071B20, complete sequence.
GenBankAC2351611e-154AC235161.1 Glycine max strain Williams 82 clone GM_WBa0098D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556882.11e-123zinc-finger homeodomain protein 2
SwissprotQ9SB612e-49ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A0R0EI551e-158A0A0R0EI55_SOYBN; Uncharacterized protein
STRINGGLYMA20G18520.11e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-51homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]