PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G093700.1.p
Common NameGLYMA_20G093700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 161aa    MW: 18136 Da    PI: 9.0417
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G093700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.6e-094973226
                         -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                          ++lC +f  tG+C+yGd+Ck+ H+
  Glyma.20G093700.1.p 49 NRSLCFHFVNTGFCRYGDSCKYLHP 73
                         5899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.0E-6747No hitNo description
SuperFamilySSF902295.23E-84776IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.0984875IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-54974IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-74973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-75172IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MAVKKCYCEK QFQDTAADRK RHVLGIQQQQ AKARWYDSFK QQQIPPVPNR SLCFHFVNTG  60
FCRYGDSCKY LHPIPNNNLQ QPPVLTTPSP SPPPGNVVGV SLDNLPPLLQ PPPEGVYPHL  120
PFSTGDKFVI LRTSHYCISV SVFNHFISLL FLPMFLPVFP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G093700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236361.28e-65putative U1 zinc finger protein
RefseqXP_028182862.18e-65zinc finger CCCH domain-containing protein 3 isoform X2
SwissprotQ0JP112e-24C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLK7N2I81e-113K7N2I8_SOYBN; Uncharacterized protein
STRINGGLYMA20G22611.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Representative plantOGRP85391213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.16e-16C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]