PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G099100.1.p
Common NameGLYMA_20G099100, LOC100500316
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 174aa    MW: 19200.8 Da    PI: 10.1278
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G099100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00163456123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+++F +   L  H  +H
  Glyma.20G099100.1.p 34 FECKTCNRRFASFQALGGHRASH 56
                         89*********999998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-832103No hitNo description
PfamPF139121.9E-123358IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0973461IPR007087Zinc finger, C2H2
SMARTSM003550.253456IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
PfamPF139126.0E-1080105IPR007087Zinc finger, C2H2
PROSITE profilePS501579.16281108IPR007087Zinc finger, C2H2
SMARTSM003550.581103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MKREREVDSI TMANYLMLLS RTTTNLNTSN NRVFECKTCN RRFASFQALG GHRASHKKPR  60
LMGESDSQVL IHGSPPKPKT HECSICGLEF AIGQALGGHM RRHRAAAASN GNMHTTINSW  120
LSSSNSGGST VDNTLPPNMN NKANNTKRVL FPDLNLTPLE NDLEFLKFGH CFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G099100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0912330.0BT091233.1 Soybean clone JCVI-FLGm-7B5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236265.11e-127C2H2-type zinc finger domain-containing protein
TrEMBLC6T1C71e-126C6T1C7_SOYBN; Uncharacterized protein
STRINGGLYMA20G23180.11e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.18e-29C2H2 family protein