PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.20G103400.1.p

Common Name

GLYMA_20G103400, LOC100800443

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TCP

Protein Properties

Length: 243aa MW: 25768.9 Da PI: 10.0992

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G103400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.7	5e-39	28	201	2	118
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+++++tgt++++as++ s ss +s+s + Glyma.20G103400.1.p 28 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSVIAATGTGTIPASFSsV--SLSSPSSTS--Dyk 113 78*******************************************************************77731..222222222..133 PP TCP 89 ..........................................................kaaksaakskksqksaasalnlakesraka 118 +aa++ + + +q+++++a+ +a+++r+++ Glyma.20G103400.1.p 114 pqllaptpfilgkrirtdedsskdeavsvgpslvgpyappgpgvvpawpdfgqiwsfvAAAAAPEMVSVPQQQQQQASLFAHHHRQQQ 201 5667778888888888888888889999999999999999999999999999999998444444455555555555577777777654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.1E-34	34	172	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.35	34	88	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MSNSDGTTNG AITEAQRQQQ QQGGKALAVK KPPSKDRHSK VDGRGRRIRM PIICAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSVIAATG TGTIPASFSS VSLSSPSSTS DYKPQLLAPT 120 PFILGKRIRT DEDSSKDEAV SVGPSLVGPY APPGPGVVPA WPDFGQIWSF VAAAAAPEMV 180 SVPQQQQQQA SLFAHHHRQQ QQLAIGEALA ARVGNYLPGH LNLLASLSGG PGNSGRRDDE 240 PR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G103400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006605845.1	1e-177	transcription factor TCP7
Swissprot	Q9FMX2	2e-85	TCP7_ARATH; Transcription factor TCP7
TrEMBL	I1NF57	1e-175	I1NF57_SOYBN; Uncharacterized protein
STRING	GLYMA20G23700.1	1e-176	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53
Representative plant	OGRP8514	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-75	TCP family protein

Link Out ? help Back to Top
Phytozome	Glyma.20G103400.1.p
Entrez Gene	100800443