PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G108000.1.p
Common NameGLYMA_20G108000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 455aa    MW: 53298 Da    PI: 9.2111
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G108000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-1122108396
                          EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          k  + +d+ ++g l++p++f++++  g++  +   ++l  ++g +W+vk   +k +  ++l + WkeF++   L++   +vFk++g+s+f
  Glyma.20G108000.1.p  22 KR-IEEDAIRNGELRIPRSFVNKCweGMS--N--PVVLLLRNGAEWKVKW--KKLDVDVWLIDDWKEFADFCCLDQDHLLVFKYMGKSRF 104
                          43.4899*****************85333..3..49999999********..999999****************************9999 PP

                          ..EEEE CS
                   B3  91 elvvkv 96 
                             v +
  Glyma.20G108000.1.p 105 --QVVI 108
                          ..5555 PP
2B345.81.1e-14248335998
                          HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++ +++ l +p +f++e ++k+  +  + l  ++ r W vk+  + +sg+++l+ GW +Fvk+n+Lk g ++vF+ +++ + +++v +fr
  Glyma.20G108000.1.p 248 SYIERSVLFMPGNFITEDQQKE--DDHVFLWISNERAWHVKFYLSHSSGQILLSIGWMDFVKDNNLKIGNVCVFEQIKKPGISFRVVIFR 335
                          4455667999*****9997664..44799999999*******88*******************************888888888888887 PP
3B347.72.8e-153714461297
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          +++ + +pkkf+++h++++++  ++tl+    rsW+v+l  + ++ r  +t+GW+eF ++ +L++gD++ F+l+++++f  v+ v+
  Glyma.20G108000.1.p 371 QLCHMNVPKKFIKNHDIDNTK--EVTLQV-GKRSWNVTL--DCYG-R--FTSGWSEFMSQCDLEAGDVCYFELIDKKKF--VFEVR 446
                          567899*********999655..677655.77*******..6665.4..89***********************98998..55554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1518112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-1618119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.48919112IPR003340B3 DNA binding domain
CDDcd100171.43E-1019109No hitNo description
SMARTSM010193.6E-720112IPR003340B3 DNA binding domain
PfamPF023622.2E-921109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-17233335IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-18235335IPR015300DNA-binding pseudobarrel domain
CDDcd100172.45E-11239335No hitNo description
PROSITE profilePS5086312.774240337IPR003340B3 DNA binding domain
SMARTSM010190.01241337IPR003340B3 DNA binding domain
PfamPF023621.4E-11248335IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-17359445IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.039360449IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-17362452IPR015300DNA-binding pseudobarrel domain
CDDcd100177.78E-12362449No hitNo description
SMARTSM010191.0E-12363449IPR003340B3 DNA binding domain
PfamPF023629.7E-12371446IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGWAFRLHFF VWPSTSDIHF FKRIEEDAIR NGELRIPRSF VNKCWEGMSN PVVLLLRNGA  60
EWKVKWKKLD VDVWLIDDWK EFADFCCLDQ DHLLVFKYMG KSRFQVVIFY QNGLEMQYPL  120
MEETIDGNSL CQPKRAKSPL PFSSSIKKVK TNPRKEPSSY PGHDHDVKTE PAQSQRRKVE  180
LSKKFHADDL DDAKPKKRGG RRRRIMCSNS RAIKRDELLQ DTESSTALER AKAFRTDNPS  240
FIRAMGKSYI ERSVLFMPGN FITEDQQKED DHVFLWISNE RAWHVKFYLS HSSGQILLSI  300
GWMDFVKDNN LKIGNVCVFE QIKKPGISFR VVIFRDPEES SPFKFPDSES RRFNNNKVSE  360
NHFTISIKPS QLCHMNVPKK FIKNHDIDNT KEVTLQVGKR SWNVTLDCYG RFTSGWSEFM  420
SQCDLEAGDV CYFELIDKKK FVFEVRFKRC ISID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G108000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211029.21e-168B3 domain-containing transcription factor VRN1-like
TrEMBLK7N2T30.0K7N2T3_SOYBN; Uncharacterized protein
STRINGGLYMA20G24222.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14649515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-20B3 family protein