PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G108100.1.p
Common NameGLYMA_20G108100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 129aa    MW: 14725.8 Da    PI: 9.2194
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G108100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.4e-1522901686
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                           +p +f++e ++k+  +  +tl +++ r+W v++  +++s++++l++GW + vk n+Lk g +++F+ ++
  Glyma.20G108100.1.p 22 KAMPGNFITEEQQKE--DDSVTLWTSEDRTWHVNFYLNRSSKQIILGAGWMDAVKNNNLKIGNVCIFEQSK 90
                         567889998877664..447***************88*******************************433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.7437104IPR003340B3 DNA binding domain
PfamPF023622.4E-112089IPR003340B3 DNA binding domain
SuperFamilySSF1019361.75E-1223101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-1327105IPR015300DNA-binding pseudobarrel domain
CDDcd100174.51E-1035101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MPIGDAQNQR LLEVSCYKKI LKAMPGNFIT EEQQKEDDSV TLWTSEDRTW HVNFYLNRSS  60
KQIILGAGWM DAVKNNNLKI GNVCIFEQSK KPGISFRVVN FHDREESNPS KFPGNLKIGE  120
RSWPVRLA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G108100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022640638.12e-29B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLK7N2T44e-91K7N2T4_SOYBN; Uncharacterized protein
STRINGGLYMA20G24233.17e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14649515