PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G108300.1.p
Common NameGLYMA_20G108300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 299aa    MW: 34433.7 Da    PI: 9.9222
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G108300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.6e-161897288
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                         fk+ + s+v    ++ +p+kf++++gg    s  + l+ +++++Wev    +k  g+++++kGWkeFv+   L+ g fv+Fk++g+s
  Glyma.20G108300.1.p 18 FKTILESNVE---WMKIPNKFTRRYGGG--LSNPVFLRPPDSKEWEVHW--TKENGEVWFQKGWKEFVEYYSLEHGHFVLFKYNGTS 97
                         5555444444...789*********877..5667***************..*******************************98843 PP
2B337.93.2e-122292963298
                          --SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  32 esktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++k+ ++ + ++r W vkl+   ++g      +t+GW+ F+k+ +L++gD+++F+l++ ++ +l v++ +
  Glyma.20G108300.1.p 229 RKKQNVMLQIENRMWPVKLTN--GGGDmqyDRFTSGWSLFAKESKLQAGDICIFELIDPDGPTLEVHITK 296
                          334456677888*******54..43333445799***********************9888889998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.26714107IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-2215107IPR015300DNA-binding pseudobarrel domain
CDDcd100178.45E-1816105No hitNo description
Gene3DG3DSA:2.40.330.101.3E-2216107IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.4E-1317107IPR003340B3 DNA binding domain
PfamPF023621.1E-132496IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-11190295IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0024192298IPR003340B3 DNA binding domain
CDDcd100171.09E-9223296No hitNo description
Gene3DG3DSA:2.40.330.101.1E-12227296IPR015300DNA-binding pseudobarrel domain
PfamPF023627.3E-10229296IPR003340B3 DNA binding domain
PROSITE profilePS5086310.433234298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MATPPLVQRK ASLPIHFFKT ILESNVEWMK IPNKFTRRYG GGLSNPVFLR PPDSKEWEVH  60
WTKENGEVWF QKGWKEFVEY YSLEHGHFVL FKYNGTSLID VLILDRSAIE IDDEMGTVDP  120
NVEKLHADKG VRSDHHQTKV RVRPRSPLVS SEPRNKMPSG SEKAIERTSS LNTPKLLRAK  180
KVARNFVSNN VFFTVVIARP QLEEGAWVWF NIELIKVIKV VPKFLDMERK KQNVMLQIEN  240
RMWPVKLTNG GGDMQYDRFT SGWSLFAKES KLQAGDICIF ELIDPDGPTL EVHITKAR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G108300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014628020.11e-118B3 domain-containing protein At1g49475
TrEMBLA0A0R0EIL90.0A0A0R0EIL9_SOYBN; Uncharacterized protein
STRINGGLYMA20G24256.11e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.14e-19B3 family protein