PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G108400.1.p
Common NameGLYMA_20G108400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 268aa    MW: 30895.3 Da    PI: 6.7204
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G108400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.3e-16241031297
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          ++ rl +p+kf++++gg    +  + ++ ++g +W+v+   +k+ g+++++kGWkeFv+   L+ g  + Fk++g+s+    v ++
  Glyma.20G108400.1.p  24 NLERLKIPNKFTSKYGGG--LPNPVFIKPLDGTQWKVNW--TKQNGEVWFEKGWKEFVEHYSLDHGHLIFFKYEGTSQI--DVLIL 103
                          56789**********777..4445999************..********************************997665..56665 PP
2B343.84.5e-14178265199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ff+v++++ + + grl lp   ++ + ++  ++k l+  ++  rsW+vkl   +++    l++GW +F+++ +L+ gD++vF+l++r++ 
  Glyma.20G108400.1.p 178 FFTVFIKPVHVADGRLPLP--DLKGIIEN--KEKYLK-LQLGERSWNVKL--LNNR----LSAGWTSFASESELQPGDVCVFELINREDS 256
                          6777777777777755555..44434333..333455.34677*******..9999....9************************99888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                           ++v+vf++
  Glyma.20G108400.1.p 257 VFKVHVFKR 265
                          89***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.84413106IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-2015112IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-1515104No hitNo description
Gene3DG3DSA:2.40.330.103.6E-2115106IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-1216106IPR003340B3 DNA binding domain
PfamPF023622.3E-132397IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-14175266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-14176265IPR015300DNA-binding pseudobarrel domain
CDDcd100172.98E-12177264No hitNo description
PROSITE profilePS5086311.293178266IPR003340B3 DNA binding domain
PfamPF023628.3E-11178265IPR003340B3 DNA binding domain
SMARTSM010192.4E-10178266IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAAHRPGRDA TLPILFFKII LKTNLERLKI PNKFTSKYGG GLPNPVFIKP LDGTQWKVNW  60
TKQNGEVWFE KGWKEFVEHY SLDHGHLIFF KYEGTSQIDV LILDQSALEI DYLCDTCDEN  120
EILDHTHEAP NMIFGEWPDQ KAEKIRGEEP IERTSSLNMP TQSRAKEVAR NFISYNPFFT  180
VFIKPVHVAD GRLPLPDLKG IIENKEKYLK LQLGERSWNV KLLNNRLSAG WTSFASESEL  240
QPGDVCVFEL INREDSVFKV HVFKRQC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1414826418141B3 domain-containing transcription factor VRN1
4i1k_B4e-1414826418141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G108400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028220427.11e-169B3 domain-containing protein REM16-like
TrEMBLK7N2T70.0K7N2T7_SOYBN; Uncharacterized protein
STRINGGLYMA20G24268.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-21B3 family protein