PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G113600.1.p
Common NameGLYMA_20G113600, LOC100775280
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 456aa    MW: 50671.7 Da    PI: 6.3925
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G113600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.22e-09166206340
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 
                          + k  rr+++NReAA++sR+RKka++++Le+   + ++Le+
  Glyma.20G113600.1.p 166 DQKTVRRLAQNREAAKKSRLRKKAYVQQLENsrvRLAQLEQ 206
                          568889************************83334444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.3E-8157213No hitNo description
SMARTSM003382.5E-6164235IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.209166210IPR004827Basic-leucine zipper domain
PfamPF001709.8E-7167207IPR004827Basic-leucine zipper domain
CDDcd147086.94E-21168220No hitNo description
SuperFamilySSF579592.89E-6168211No hitNo description
PROSITE patternPS000360171186IPR004827Basic-leucine zipper domain
PfamPF141445.3E-28255327IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MQSFNTTTES ESISPLYCHS PFFHRGNDTS RNPSRFSDLQ HSFRQHDAVD LSSSSVFGGK  60
SSNVAVVASN LQCGTFNTNL GCAEFGSTEQ GPMFQRGTTV SMATGNQHVE NWADDSHPTE  120
DTCTDIDTDD KNQCFSTVSW CHGVGDGALV VVDSHDQSKT KVKAEDQKTV RRLAQNREAA  180
KKSRLRKKAY VQQLENSRVR LAQLEQELQR ARQQGAFIAT GIPGDRGHSS VANGALAFDM  240
DYARWVDEHQ RLIIDIRSAI NSQMGENELH LLVDGAMAHY DELFRLKSIG AKVDVFHILS  300
GMWKTPAERC FIWLGGFRSS ELLKIVRNQL EPLTEQQLMG IYNLQQSSQQ AEDALSQGME  360
ALQQSLSETL SSSSLGPSGS ENVAEYMGQM AIALGKLATL ENFLHQADLL RQQTLQQMRR  420
ILTTCQAARA LLVINDYVTR LRALNSLWLA CPREY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.189810.0somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G113600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354731e-150AC235473.1 Glycine max strain Williams 82 clone GM_WBc0110I22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006605892.10.0transcription factor TGA2.3
SwissprotQ415581e-159HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLK7N2V30.0K7N2V3_SOYBN; Uncharacterized protein
STRINGGLYMA20G24766.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60223149
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-125bZIP family protein