PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.20G115700.1.p

Common Name

GLYMA_20G115700, LOC100779034

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 225aa MW: 24782.5 Da PI: 8.8656

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G115700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	87.8	1.5e-27	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C++lr++C+++C+++p++ p++q++++ +++k++G++ +l+l++a+p++ + +++sl+yeA+ r+ +P yG++g+++++++ Glyma.20G115700.1.p 4 SCNGCRILRKGCNDNCIIRPCLewmnsPESQANATLFLAKFYGRTGLLNLITAAPQHLGPVVFRSLLYEACGRLVNPTYGSLGLFWTGEW 93 6*************************************************************************************** PP DUF260 86 qleqlkaelallkee 100 ++++++++l++++ Glyma.20G115700.1.p 94 AQCEAAVDAVLTGSK 108 *****99998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.623	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-22	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MKSSCNGCRI LRKGCNDNCI IRPCLEWMNS PESQANATLF LAKFYGRTGL LNLITAAPQH 60 LGPVVFRSLL YEACGRLVNP TYGSLGLFWT GEWAQCEAAV DAVLTGSKIN GVAPSDGHTS 120 GTLASDHILS TCDIRHMKNG TNVDDMRGRI QFKNVKQVIK PKPRMGSIDS TMLWKPNCQS 180 QSMETIEASL VSQDELNRVR KIKLDLELTL GFRCQSTNGK KTHY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G115700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003555233.1	1e-169	LOB domain-containing protein 40
Swissprot	Q9CA30	3e-57	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	I1NFI9	1e-168	I1NFI9_SOYBN; Uncharacterized protein
STRING	GLYMA20G24950.1	1e-168	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14785	6	14
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	1e-59	LOB domain-containing protein 42

Link Out ? help Back to Top
Phytozome	Glyma.20G115700.1.p
Entrez Gene	100779034