PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.20G133000.1.p

Common Name

GLYMA_20G133000, LOC100816269

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 172aa MW: 18744.7 Da PI: 8.0672

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G133000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.3	6.6e-30	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++dC+l+ ++ p++q++++ +v+k+FG+++++++l+++p ++r+++++sl+yeA r+ +Pv+Gavg+++++++ Glyma.20G133000.1.p 2 SCNGCRVLRKGCSDDCMLRHCLvwienPQAQAHATLFVAKFFGRATLMSFLSSVPSNQRSALFQSLLYEAVGRTINPVNGAVGLLWTGNW 91 6*************************************************************************************** PP DUF260 86 qleqlkaelal 96 +l+q+ +e +l Glyma.20G133000.1.p 92 HLCQMGVEKVL 102 **9887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.474	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.7E-27	2	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MSCNGCRVLR KGCSDDCMLR HCLVWIENPQ AQAHATLFVA KFFGRATLMS FLSSVPSNQR 60 SALFQSLLYE AVGRTINPVN GAVGLLWTGN WHLCQMGVEK VLRGGAALTP LPQVITSVER 120 VMVGGEIIMC HQPKKQHVGT PPEEESEIST FGSRPLDSAP QSQTNLLTLF F*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G133000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235177	0.0	AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003555291.1	1e-125	LOB domain-containing protein 38
Refseq	XP_028219492.1	1e-125	LOB domain-containing protein 38-like
Swissprot	Q9FN11	3e-58	LBD37_ARATH; LOB domain-containing protein 37
Swissprot	Q9SN23	3e-58	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A445F4N4	1e-124	A0A445F4N4_GLYSO; LOB domain-containing protein 37
TrEMBL	I1NG19	1e-124	I1NG19_SOYBN; Uncharacterized protein
STRING	GLYMA20G26910.1	1e-125	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-60	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Glyma.20G133000.1.p
Entrez Gene	100816269

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]