PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G136600.1.p
Common NameLOC100780986
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 243aa    MW: 25824.5 Da    PI: 7.058
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G136600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.51.5e-22247449
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +n+ n qvtfskRr g++KKA+EL++LC+aeva+++fs+ +k++ +
  Glyma.20G136600.1.p  2 SNEANLQVTFSKRRSGLFKKASELCTLCGAEVALVVFSPGQKVFSF 47
                         7999**************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.661151IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-21150IPR002100Transcription factor, MADS-box
CDDcd002651.61E-30162No hitNo description
PfamPF003193.0E-24247IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-23265IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-101328IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-102849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSNEANLQVT FSKRRSGLFK KASELCTLCG AEVALVVFSP GQKVFSFGHP SVDGVIERYL  60
TGVAPPEADN MNYIDVHRMA KVVDLNAQLT HIKDQLEAER KRAKELGGIQ KEAETHLWWA  120
RPVADITDIN NLLKLKKAFQ QLKQDVSGLA GMALFQSVAN GNPGHQFFAG ASSSAVPNVV  180
LQSQPLPVAQ VFPPAVPQMM FPPPMFENYM VNPNGFDDMG MGGGGFGGAG PSSAGGGGGG  240
FF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G136600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555308.11e-179agamous-like MADS-box protein AGL62
RefseqXP_028219687.11e-179agamous-like MADS-box protein AGL62
TrEMBLA0A445F4L51e-178A0A445F4L5_GLYSO; Agamous-like MADS-box protein AGL62
STRINGGLYMA20G27341.11e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-45AGAMOUS-like 62