PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G155200.1.p
Common NameGLYMA_20G155200, LOC100776717
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 207aa    MW: 22030.4 Da    PI: 4.4067
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G155200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.9e-174492255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+G r+++  g+Wv+eIr+p++   +kr++lg++ tae+Aa+a++ a+++l+g
  Glyma.20G155200.1.p 44 RYRGTRYRS--GKWVSEIREPRK---TKRIWLGTYPTAEMAAAAYDVAALALKG 92
                         577777754..88*******843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-2844106IPR001471AP2/ERF domain
CDDcd000181.46E-1644102No hitNo description
Gene3DG3DSA:3.30.730.102.0E-2544101IPR001471AP2/ERF domain
PfamPF008471.1E-104492IPR001471AP2/ERF domain
PROSITE profilePS5103220.3544100IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-1845102IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDGNPFGNVP PPPIQVPDNL AISSSSSPTP TTSSPSPTPS GGVRYRGTRY RSGKWVSEIR  60
EPRKTKRIWL GTYPTAEMAA AAYDVAALAL KGPDTPLNFP NSILSYPIPA SLSATDIRAA  120
AAAAAQARIV RAPQECGETV NPDDGGGQGM SERREEYIDE DELLNMPNLL DDMARGMQVS  180
PLRITSYSSD DSPGNSDGDN LWSYTL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G155200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606090.11e-147ethylene-responsive transcription factor ERF027
SwissprotQ9FJ903e-44ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLI1NGP81e-146I1NGP8_SOYBN; Uncharacterized protein
STRINGGLYMA20G29440.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-30ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]