PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G157900.2.p
Common NameGLYMA_20G157900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 271aa    MW: 30770.7 Da    PI: 9.27
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G157900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.5e-151562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEd +l + + ++G g+W++++ + g+ R +k+c++rw +yl
  Glyma.20G157900.2.p 15 KGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 62
                         678*******************************************97 PP
2Myb_DNA-binding55.99.9e-1868113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+++++E+e ++ ++++lG++ W++I+++++ gRt++++k++w++yl
  Glyma.20G157900.2.p  68 RGKFSKQEEETILTLHHMLGNK-WSRISQHLP-GRTDNEIKNYWHSYL 113
                          89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-221065IPR009057Homeodomain-like
PROSITE profilePS5129417.8631062IPR017930Myb domain
SuperFamilySSF466892.32E-2812109IPR009057Homeodomain-like
SMARTSM007172.8E-111464IPR001005SANT/Myb domain
PfamPF002492.8E-131562IPR001005SANT/Myb domain
CDDcd001671.38E-91862No hitNo description
PROSITE profilePS5129426.0763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2566117IPR009057Homeodomain-like
SMARTSM007172.2E-1667115IPR001005SANT/Myb domain
PfamPF002496.6E-1768113IPR001005SANT/Myb domain
CDDcd001673.20E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGYQPLEKGK PKHKKGLWSP EEDNKLRNHI LKHGHGCWSS VPIKAGLQRN GKSCRLRWIN  60
YLRPGLKRGK FSKQEEETIL TLHHMLGNKW SRISQHLPGR TDNEIKNYWH SYLKKRVAKA  120
KEMESHNQIK YASSSSDTMD SSHSLQNLAT QCPLNYNFTK EASQSSLPKL LFAEWLSLDH  180
LNSANSVDSL GLRNGFDQNS SFHEAAIHDM SEVPFGGEYN RCVSNISAPE MFNSQLKYGN  240
QMVENGYIHC MPGVDLSSNF SISNDAIMYI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-221111723128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G157900.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0977340.0BT097734.1 Soybean clone JCVI-FLGm-16G14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556102.10.0transcription factor LAF1
SwissprotQ9M0K43e-58LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A0R0ECB40.0A0A0R0ECB4_SOYBN; Uncharacterized protein
TrEMBLI1NGS70.0I1NGS7_SOYBN; Uncharacterized protein
STRINGGLYMA20G29710.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.13e-62myb domain protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]