PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G157900.3.p
Common NameGLYMA_20G157900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 187aa    MW: 20981.3 Da    PI: 6.5048
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G157900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.2e-112291948
                         TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                         lG++ W++I+++++ gRt++++k++w++yl
  Glyma.20G157900.3.p  2 LGNK-WSRISQHLP-GRTDNEIKNYWHSYL 29
                         8999.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.671133IPR017930Myb domain
PfamPF002491.7E-9129IPR001005SANT/Myb domain
SuperFamilySSF466892.26E-9235IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-14230IPR009057Homeodomain-like
CDDcd001671.34E-7429No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MLGNKWSRIS QHLPGRTDNE IKNYWHSYLK KRVAKAKEME SHNQIKYASS SSDTMDSSHS  60
LQNLATQCPL NYNFTKEASQ SSLPKLLFAE WLSLDHLNSA NSVDSLGLRN GFDQNSSFHE  120
AAIHDMSEVP FGGEYNRCVS NISAPEMFNS QLKYGNQMVE NGYIHCMPGV DLSSNFSISN  180
DAIMYI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G157900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352300.0AC235230.1 Glycine max strain Williams 82 clone GM_WBb0026I18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556102.11e-136transcription factor LAF1
TrEMBLA0A0R0EN461e-136A0A0R0EN46_SOYBN; Uncharacterized protein
STRINGGLYMA20G29710.11e-135(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-15myb domain protein 19