PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G158100.1.p
Common NameGLYMA_20G158100, LOC100782075
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 310aa    MW: 34732.2 Da    PI: 7.7766
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G158100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.51.8e-191461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEd+ lvd+++++G g+W++ +++ g+ R++k+c++rw +yl
  Glyma.20G158100.1.p 14 RGAWTPEEDQALVDYIQKHGHGSWRSLPKHAGLLRCGKSCRLRWINYL 61
                         89******************************99************97 PP
2Myb_DNA-binding537.8e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T eE+  +v+++ +lG++ W++Ia+ ++ gRt++++k++w+++l
  Glyma.20G158100.1.p  67 RGPFTSEEESTIVQLHGMLGNR-WASIASQLP-GRTDNEIKNFWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-24563IPR009057Homeodomain-like
PROSITE profilePS5129418.295961IPR017930Myb domain
SuperFamilySSF466894.87E-3111108IPR009057Homeodomain-like
SMARTSM007171.4E-141363IPR001005SANT/Myb domain
PfamPF002491.2E-171461IPR001005SANT/Myb domain
CDDcd001676.70E-121661No hitNo description
PROSITE profilePS5129425.21862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2664116IPR009057Homeodomain-like
SMARTSM007178.5E-1666114IPR001005SANT/Myb domain
PfamPF002493.0E-1567112IPR001005SANT/Myb domain
CDDcd001671.09E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGKAPCCEKH GVRRGAWTPE EDQALVDYIQ KHGHGSWRSL PKHAGLLRCG KSCRLRWINY  60
LRPGIKRGPF TSEEESTIVQ LHGMLGNRWA SIASQLPGRT DNEIKNFWNT HLKKRLLRSC  120
HSQRAKQLCV IPDQSIVKSE SPSTRHMVQW ESVRVETEAR LSLESTMLNS WPTSKTCPDH  180
FLQLWHSEVG KSFRMIKGKE EGVVSQSLIS QPSSSSKLES CSDVSLQVKT NTGTSSCIPK  240
LEDVSMVHEQ TSSYKPKLDD DTAGSDSGNY EFLDTSDSAL KHLLHMPDSD MGFLGHNDHF  300
QNLLDGTCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-281411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.376870.0seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G158100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352300.0AC235230.1 Glycine max strain Williams 82 clone GM_WBb0026I18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606110.10.0transcription factor MYB41
RefseqXP_025983260.10.0transcription factor MYB41
RefseqXP_025983261.10.0transcription factor MYB41
SwissprotQ9M2D93e-92MYB17_ARATH; Transcription factor MYB17
TrEMBLI1NGS90.0I1NGS9_SOYBN; Uncharacterized protein
STRINGGLYMA20G29730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.14e-90myb domain protein 17