PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G162800.1.p
Common NameGLYMA_20G162800, LOC778166
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 330aa    MW: 36812.7 Da    PI: 9.4248
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G162800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.3e-1055124147
                          TSSS-HHHHHHHHHHHHHTTTT........................-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg........................tWktIartmgkgRtlkqcksrwqky 47 
                          r +WT+ E++++++a ++  +                         +Wk+I + +g  +t  q++s+ qky
  Glyma.20G162800.1.p  55 RESWTEPEHDKFLEALQLGENQkeigqffilfevfsldaesdrfdrDWKKIEAFVG-SKTVIQIRSHAQKY 124
                          789************9877766**********************************.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.64E-1149130IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-653130IPR009057Homeodomain-like
SMARTSM007170.001454127IPR001005SANT/Myb domain
PfamPF002491.2E-655124IPR001005SANT/Myb domain
CDDcd001674.49E-457125No hitNo description
TIGRFAMsTIGR015571.4E-797127IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MVSKNPNPSE AFYLDPSGMS LPGILPFAAA ATATADSFED PAKKTRKPYT ITKSRESWTE  60
PEHDKFLEAL QLGENQKEIG QFFILFEVFS LDAESDRFDR DWKKIEAFVG SKTVIQIRSH  120
AQKYFLKVQK SGTNEHLPPP RPKRKAAHPY PQKASKTAPV LSQVSGSFQS SSALLEPGYI  180
LKHDSSAMPK TPIINTAVSS WSNNSLQKTT SVLHGQKQKV NNCCSSSRSP RAQLVGESNG  240
QRNNSHPLRV LPDFAEVYSF IGSVFDPNVT GHVQKLKRMD PIDVETVLLL MRNLSINLAS  300
PDFEDHRRLL ASYEVEPEVD KYKCRLNHA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.360180.0flower
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G162800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606149.10.0protein REVEILLE 6 isoform X1
SwissprotQ8H0W31e-113RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0R0EDA60.0A0A0R0EDA6_SOYBN; Uncharacterized protein
STRINGGLYMA20G30250.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-92MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]