PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G166500.1.p
Common NameGLYMA_20G166500, LOC100816474
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 446aa    MW: 51028.8 Da    PI: 6.6185
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G166500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix841.9e-26118212183
             trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                          +Wt+++v++Li+a+++++e++ ++            +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++
  Glyma.20G166500.1.p 118 KWTDKMVRLLITAVSYIGEDVTADGgssgrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVEN 207
                          7******************99986445677888899**********************************************55888888 PP

             trihelix  79 cpyfd 83 
                           +++d
  Glyma.20G166500.1.p 208 PALLD 212
                          87776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-24116241No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEGNLPQGGI IQGGTSFGGF DLPIRVQHQA QHPHTMHQHQ THPRQGSSVH STVHDGFPLT  60
MGTMQNCDQT ISLTDFSKGD RSKNSASEED EPSYTEDGVD CHHETTRGKK GSPWQRVKWT  120
DKMVRLLITA VSYIGEDVTA DGGSSGRRKF AVLQKKGKWK SVSKVMAERG YHVSPQQCED  180
KFNDLNKRYK KLNDMLGRGT SCQVVENPAL LDVIDFLSEK EKDDVRKILS SKHLFYEEMC  240
SYHNGNRLHL PHDPALQRSL QLALRNRDDH DDDIRRSHHD DHDEDDQDAE IDDHDDFEEN  300
CASHGDSRGI YGPSGGSMKK LKQCQGQEDA NTFGKSLNCQ EYNKSSYPHG QMIQSDVNQG  360
LPEGMRAAWL QKQWVESHTL QLEEQKLQIQ VEMLELEKQR FKWQRFSKKK DRELEKLSLE  420
NERMKLENER IALELKRKEM GTGFK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.616140.0meristem| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G166500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556151.10.0uncharacterized protein LOC100816474
RefseqXP_028221224.10.0uncharacterized protein LOC114402756
TrEMBLA0A0B2SNA20.0A0A0B2SNA2_GLYSO; Uncharacterized protein
TrEMBLI1NH200.0I1NH20_SOYBN; Uncharacterized protein
STRINGGLYMA20G30630.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-167sequence-specific DNA binding transcription factors