PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G185200.1.p
Common NameGLYMA_20G185200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 520aa    MW: 57883.4 Da    PI: 4.4835
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G185200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-08379422146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r  W++++ +++++av+ +G+  +++    ++ g+t+ q+k+++++
  Glyma.20G185200.1.p 379 RETWSKQDTQRFYEAVRTMGTA-FSLLELLFP-GKTPRQIKLKFNN 422
                          689*******************.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-5372422IPR009057Homeodomain-like
PfamPF159632.4E-19374440No hitNo description
SMARTSM007173.2E-6378426IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-7380423IPR009057Homeodomain-like
CDDcd001678.43E-5381422No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MMEKSNKSLA ATIPSQLDSN AMYSEDAVHN GTRDWPSSFG SSGEAADIFS GLESLNDFLT  60
QAATDTRKPA LHSFNEKGAE ENFVSPAFTF NEAAVLNEDD THTSNRSETE EIVDLNPARP  120
GDDVFHYQSM KSGEDPTSGI PVHEELTNAA DSPTLADSLH ADVTREKEDS NKRKKDGSTS  180
FSLRKNIISS IAGEEDKGAT RKPANSSFNE DVEDNNDLDD DYEVDNPSKK KRVSTSSQKK  240
LVAKSGKTSR KRKKANDDLE KSEEPPKNFG YILMQKIFFF IVDKALLEIP EDELDLRQIP  300
IKDTILLEEH RERLAVCILY SNPCVAIGGV SLHEAGAYDE EEFSCSEDGR DPYDDQANEG  360
ITSTSHLFNH QSLMKKAPRE TWSKQDTQRF YEAVRTMGTA FSLLELLFPG KTPRQIKLKF  420
NNEDGKYRSR LDDAVYNRAK DHSGDLWIEP VKLASTKAEE DPSGDASDFM MAEEVVDLTA  480
GTNDADDKAQ EDSVAVHSPE QSDDRGHDFQ KWSQYKSVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249253RKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.440971e-131cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G185200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028191523.10.0uncharacterized protein LOC114377281 isoform X3
TrEMBLA0A0R0EMU90.0A0A0R0EMU9_SOYBN; Uncharacterized protein
STRINGGLYMA20G32621.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Representative plantOGRP8075913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.17e-21MYB_related family protein