PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G188100.1.p
Common NameGLYMA_20G188100, LOC100787750
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 538aa    MW: 61233.9 Da    PI: 6.5532
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G188100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.15.6e-29125210187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+l L+e+r+++++++r++++k+plW e+s+ m +e g++rs k+Ckek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Glyma.20G188100.1.p 125 RWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMaEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASR--QDGKHYRFFRQLEA 210
                          8*************************************7778*****************************8..55667*******85 PP
2trihelix46.41e-14447520171
             trihelix   1 rWtkqevlaLiearremeerlrrgk...lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                          rWt+ e+  L+++r++ e+r+r+++    + + W+e+++km+  gf rs+ +Ck+ we+++   +++ +   ++
  Glyma.20G188100.1.p 447 RWTEMEISNLMQLRTSFEQRFRENNngyMENGVWDEIAAKMACLGFDRSASECKQIWEEISISLRRTVDECDDG 520
                          8*********************97655599*******************************9999998877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6122185IPR001005SANT/Myb domain
CDDcd122035.03E-22124190No hitNo description
PROSITE profilePS500906.888124183IPR017877Myb-like domain
PfamPF138371.5E-19124211No hitNo description
SMARTSM007170.41444509IPR001005SANT/Myb domain
CDDcd122031.52E-14446513No hitNo description
PROSITE profilePS500906.644446507IPR017877Myb-like domain
PfamPF138378.0E-10446522No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MGDPYGLPED LRRLIPARST HLNPSDTHLI EPLCVHHGLS SAVAAATASA TPPITYDANM  60
VGDVFFPRGF THHFAHHHDY SSSSGVNPVA TTATATATTT VSDHAFCSME SAEKGWFGFD  120
SGNNRWPRQE TLSLLEIRSR LDSKFRENNQ KAPLWNEISR IMAEEFGYQR SGKKCKEKFE  180
NLYKYYKKTK EGKASRQDGK HYRFFRQLEA ICGDQANNTH AHASTSDKTH RAGGNTAATI  240
QKQTFTTNQD HNNGDSNNNP KCSESLSISN SSQFETSSSE NNDEDLSAIA FMMKQSRDEK  300
QKGLDHTHRP SDHRRVRKSW RTKVEEIVDS HMRKIIQTQD AWMERMLSVV EQREQEMASR  360
EEERKRKESM WFDQQVHELW AKEKAWVEAR DAALIEVVRK HIGIGIGLEA LPLVEEESPN  420
KNKSQGSIDA NEFPSEGVDP GRSSSSRWTE MEISNLMQLR TSFEQRFREN NNGYMENGVW  480
DEIAAKMACL GFDRSASECK QIWEEISISL RRTVDECDDG AKRRPWYLGL KLTDDDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G188100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941220.0BT094122.1 Soybean clone JCVI-FLGm-18O17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555461.10.0trihelix transcription factor PTL
RefseqXP_028222610.10.0trihelix transcription factor PTL-like
TrEMBLA0A445F7500.0A0A445F750_GLYSO; Trihelix transcription factor PTL
TrEMBLI1NHN70.0I1NHN7_SOYBN; Uncharacterized protein
STRINGGLYMA20G32940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Representative plantOGRP8402716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.12e-80Trihelix family protein