PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G192300.1.p
Common NameGLYMA_20G192300, LOC100808260
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 605aa    MW: 66939.3 Da    PI: 4.5875
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G192300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.44.2e-5151312128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           pGfrFhPtdeelvv+yLk+k++g+  +  ++i+ vd+yk+ePwdLp  +k+k+++ ewyfFs  d+ky +g+r+nrat++gyWk+tgkd
  Glyma.20G192300.1.p   5 GPGFRFHPTDEELVVFYLKRKMTGNLSRY-DHIAVVDVYKLEPWDLPplSKLKTKDLEWYFFSALDRKYGNGSRTNRATDRGYWKTTGKD 93 
                          59***********************9888.89**************96558889999********************************* PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++v++ ++++vg+kktLv+++grap+g++t+Wvmhey++
  Glyma.20G192300.1.p  94 RPVTH-GDRTVGMKKTLVYHSGRAPHGRRTNWVMHEYKM 131
                          *****.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-583154IPR003441NAC domain
PROSITE profilePS5100555.2464154IPR003441NAC domain
PfamPF023659.1E-276130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009819Biological Processdrought recovery
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MARMGPGFRF HPTDEELVVF YLKRKMTGNL SRYDHIAVVD VYKLEPWDLP PLSKLKTKDL  60
EWYFFSALDR KYGNGSRTNR ATDRGYWKTT GKDRPVTHGD RTVGMKKTLV YHSGRAPHGR  120
RTNWVMHEYK MLDEELARAG TVPDVFVVCR IFEKSGSGPK NGAKYGAPLD EKEWDVEDEQ  180
EEEEEENEQK DVAPLLVPHN AVAPPPPLSV VADNAEAHPP LTATVDNKYM VAPPPSFQAN  240
FDDEVFNAGA YVETNDLDME LNWNDIIGSD TFPSLNFHHG ECSSHAEYSK VFIKDQEPSA  300
GTFGISRPEN DWPLDMTEQH GVDTNSVNNR DNGELINIGN HLNFNDASND MNLDLFWDAN  360
ENLPTDGSFL EYNDIAIGNG SRSTEADPPA NDILDEYLTL PDDDIYKYIS FDSPQIQESE  420
NFIPNQGSPF TRQNVEGETA DKAVVSNHNS ESQTRNEASS VQNTHEAKFA PGSTNPLVKQ  480
AYGWLAGIPA APAHAMEFPA KEIALGLHPV AQSSHPAHIT TGMISITDIT LRGNAMDWTM  540
GKNGGFSTVI STGFCQPDVN SDALIPVSGK TAFVLSHGWI FLTGFSVLIL SLSCKIGSIM  600
YTGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-44616022174NAC domain-containing protein 19
3swm_B1e-44616022174NAC domain-containing protein 19
3swm_C1e-44616022174NAC domain-containing protein 19
3swm_D1e-44616022174NAC domain-containing protein 19
3swp_A1e-44616022174NAC domain-containing protein 19
3swp_B1e-44616022174NAC domain-containing protein 19
3swp_C1e-44616022174NAC domain-containing protein 19
3swp_D1e-44616022174NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.36920.0flower| leaf| meristem| root| seed coat| somatic embryo| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00343DAPTransfer from AT3G10500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G192300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353360.0AC235336.1 Glycine max strain Williams 82 clone GM_WBb0084A23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556302.10.0NAC domain-containing protein 53
TrEMBLI1NHS20.0I1NHS2_SOYBN; Uncharacterized protein
STRINGGLYMA20G33390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Representative plantOGRP1057159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-80NAC domain containing protein 2