PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G192500.1.p
Common NameGLYMA_20G192500, LOC100808783
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 466aa    MW: 52099.5 Da    PI: 7.2624
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G192500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.33e-53341611128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv +yLk+kv+gk++++ ++i+evdiy++ePwdL   +++k++++ewyfFs  dkky +g r nrat++gyWkatg+
  Glyma.20G192500.1.p  34 LAPGFRFHPTDEELVIYYLKRKVSGKSFRF-DAISEVDIYRSEPWDLAdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGN 122
                          579**************************9.99**************75348899999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v + ++++vglkktLvf++grap+g++t+Wvmheyrl
  Glyma.20G192500.1.p 123 DRPVRH-DQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 161
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-6031189IPR003441NAC domain
PROSITE profilePS5100558.05434188IPR003441NAC domain
PfamPF023651.6E-2736161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MGRETMCLST PPPTTATTTV NPVPPPPPAP PTSLAPGFRF HPTDEELVIY YLKRKVSGKS  60
FRFDAISEVD IYRSEPWDLA DKSRLKTRDQ EWYFFSALDK KYGNGGRMNR ATSKGYWKAT  120
GNDRPVRHDQ RTVGLKKTLV FHSGRAPDGK RTNWVMHEYR LVEEELERAG TGSCQPQDAY  180
VLCRVFHKNN IGPPNGQRYA PFIEEEWDDA SGMVPGADHV DNRSFAHQPR VEGNGGVLCA  240
EGRNGVVQDT QSFNKAPFDV NKLPIETQNL LAVCKRESMA EYPSPEKDDN NCKHMDDYPS  300
PQTDNPKPFS QIYKRRRHNL NSNNSNVSGD SVRTSQDPCS STITTAATAL PTATVAGTAT  360
NTAPKKHFLS ALVEFSLLES LESKDNLASI KAPDFDTENL ESSMPPSCAK FIKQMQSEMQ  420
KLSVEKETIR FEMMSAQAMI NILQSRIDVL SKENEDLKRM VAQNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-492819011167NO APICAL MERISTEM PROTEIN
1ut4_B8e-492819011167NO APICAL MERISTEM PROTEIN
1ut7_A8e-492819011167NO APICAL MERISTEM PROTEIN
1ut7_B8e-492819011167NO APICAL MERISTEM PROTEIN
3swm_A9e-492819014170NAC domain-containing protein 19
3swm_B9e-492819014170NAC domain-containing protein 19
3swm_C9e-492819014170NAC domain-containing protein 19
3swm_D9e-492819014170NAC domain-containing protein 19
3swp_A9e-492819014170NAC domain-containing protein 19
3swp_B9e-492819014170NAC domain-containing protein 19
3swp_C9e-492819014170NAC domain-containing protein 19
3swp_D9e-492819014170NAC domain-containing protein 19
4dul_A8e-492819011167NAC domain-containing protein 19
4dul_B8e-492819011167NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.612850.0epicotyl| hypocotyl
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G192500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556303.10.0NAC domain containing protein 50
SwissprotQ9SQY01e-130NAC52_ARATH; NAC domain containing protein 52
TrEMBLI1NHS30.0I1NHS3_SOYBN; Uncharacterized protein
STRINGGLYMA20G33430.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81893241
Representative plantOGRP1087158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-105NAC domain containing protein 50
Publications ? help Back to Top
  1. Higgins JD,Ferdous M,Osman K,Franklin FC
    The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
    Plant J., 2011. 65(3): p. 492-502
    [PMID:21265901]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]
  4. Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
    sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
    Plant J., 2017. 90(3): p. 505-519
    [PMID:28207953]
  5. Elmayan T, et al.
    Arabidopsis mutants impaired in cosuppression.
    Plant Cell, 1998. 10(10): p. 1747-58
    [PMID:9761800]