PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G192500.3.p
Common NameGLYMA_20G192500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 289aa    MW: 32737.2 Da    PI: 9.0775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G192500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.71.1e-53341611128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv +yLk+kv+gk++++ ++i+evdiy++ePwdL   +++k++++ewyfFs  dkky +g r nrat++gyWkatg+
  Glyma.20G192500.3.p  34 LAPGFRFHPTDEELVIYYLKRKVSGKSFRF-DAISEVDIYRSEPWDLAdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGN 122
                          579**************************9.99**************75348899999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v + ++++vglkktLvf++grap+g++t+Wvmheyrl
  Glyma.20G192500.3.p 123 DRPVRH-DQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 161
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-6031189IPR003441NAC domain
PROSITE profilePS5100558.05434188IPR003441NAC domain
PfamPF023655.9E-2836161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRETMCLST PPPTTATTTV NPVPPPPPAP PTSLAPGFRF HPTDEELVIY YLKRKVSGKS  60
FRFDAISEVD IYRSEPWDLA DKSRLKTRDQ EWYFFSALDK KYGNGGRMNR ATSKGYWKAT  120
GNDRPVRHDQ RTVGLKKTLV FHSGRAPDGK RTNWVMHEYR LVEEELERAG TGSCQPQDAY  180
VLCRVFHKNN IGPPNGQRYA PFIEEEWDDA SGMVPGADHV DNRSFAHQPR VEGNGGVLCA  240
EGRNGVVQVV ELWKVVLFKS LWKIMGFFKL PIGFQRQLER IEQALILE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-492819014170NAC domain-containing protein 19
3swm_B2e-492819014170NAC domain-containing protein 19
3swm_C2e-492819014170NAC domain-containing protein 19
3swm_D2e-492819014170NAC domain-containing protein 19
3swp_A2e-492819014170NAC domain-containing protein 19
3swp_B2e-492819014170NAC domain-containing protein 19
3swp_C2e-492819014170NAC domain-containing protein 19
3swp_D2e-492819014170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.612850.0epicotyl| hypocotyl
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G192500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-101AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556303.10.0NAC domain containing protein 50
SwissprotQ9SQX91e-105NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A0R0EDA40.0A0A0R0EDA4_SOYBN; Uncharacterized protein
STRINGGLYMA20G33430.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.11e-103NAC domain containing protein 52
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]