PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G196400.1.p
Common NameGLYMA_20G196400, LOC102664672
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 92aa    MW: 10257.8 Da    PI: 11.7424
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G196400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.5e-19354155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++y+GVr+++ +g++ AeIrdp  ng  +r +lg++ tae+Aa a+++a+ kl+g
  Glyma.20G196400.1.p  3 TCYRGVRQRP-WGKFTAEIRDPARNG--ARAWLGTYQTAEDAALAYDRAAFKLRG 54
                         68********.**********97676..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-13354IPR001471AP2/ERF domain
PROSITE profilePS5103223.525462IPR001471AP2/ERF domain
SMARTSM003805.3E-34468IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-24464IPR016177DNA-binding domain
PRINTSPR003672.9E-14516IPR001471AP2/ERF domain
CDDcd000183.44E-27563No hitNo description
Gene3DG3DSA:3.30.730.101.3E-31563IPR001471AP2/ERF domain
PRINTSPR003672.9E-144464IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MGTCYRGVRQ RPWGKFTAEI RDPARNGARA WLGTYQTAED AALAYDRAAF KLRGSKALLN  60
FPHRINFNEP PPVRVTAKKR KVPASVKLSR S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-35269370ATERF1
3gcc_A1e-35269370ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G196400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219497.11e-61ethylene-responsive transcription factor 2-like
SwissprotQ404795e-43ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A0R0EDG02e-60A0A0R0EDG0_SOYBN; Uncharacterized protein
TrEMBLA0A445F7I62e-60A0A445F7I6_GLYSO; Ethylene-responsive transcription factor 2
STRINGGLYMA20G33840.27e-54(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.19e-32ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]