PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G198500.4.p
Common NameGLYMA_20G198500, LOC100779577
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 174aa    MW: 18853.1 Da    PI: 5.6683
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G198500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.24.5e-5726121297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          reqdr+lPian+srimkk+lP n+ki+kdak+t+qecvsefisf+tseas+kcq+ekrktingddllwa+atlGfedy+eplkvyl++yr
  Glyma.20G198500.4.p  26 REQDRYLPIANISRIMKKALPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYR 115
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          e+eg++
  Glyma.20G198500.4.p 116 EAEGDT 121
                          ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.4E-5521136IPR009072Histone-fold
SuperFamilySSF471131.27E-4128145IPR009072Histone-fold
PfamPF008082.8E-293195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.2E-215977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.2E-217896No hitNo description
PRINTSPR006152.2E-2197115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSDAPPSPTH ESGGEQSPRG SSSGAREQDR YLPIANISRI MKKALPPNGK IAKDAKDTMQ  60
ECVSEFISFI TSEASEKCQK EKRKTINGDD LLWAMATLGF EDYIEPLKVY LARYREAEGD  120
TKGSARSGDG SATPDQVGLA GQNSQLVHQG SLNYIGLQVQ PQHLVMPSMQ SHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4926116292Transcription factor HapC (Eurofung)
4g92_B5e-4926116292Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.594690.0seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G198500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7755290.0FJ775529.1 Glycine max CCAAT-binding transcription factor family protein (NF-YB1a) mRNA, complete cds.
GenBankFJ7755300.0FJ775530.1 Glycine max CCAAT-binding transcription factor family protein (NF-YB1b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556333.11e-127nuclear transcription factor Y subunit B-1 isoform X1
RefseqXP_028222692.11e-127nuclear transcription factor Y subunit B-1-like
RefseqXP_028222693.11e-127nuclear transcription factor Y subunit B-1-like
SwissprotQ8VYK42e-75NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0R4J6711e-126A0A0R4J671_SOYBN; Uncharacterized protein
TrEMBLA0A445F7L71e-126A0A445F7L7_GLYSO; Nuclear transcription factor Y subunit B-8 isoform A
STRINGGLYMA20G34050.21e-126(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-77nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]