PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G199300.1.p
Common NameGLYMA_20G199300, LOC100782089
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 255aa    MW: 29555.1 Da    PI: 8.471
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G199300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.7e-161764148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd ll+ +vk +G g+W++ ar  g++R +k+c++rw +yl
  Glyma.20G199300.1.p 17 KGPWTSEEDRLLILYVKFHGEGRWNSAARLAGLKRNGKSCRLRWVNYL 64
                         79********************************************97 PP
2Myb_DNA-binding49.87.7e-1670114147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g  T++E+ ++ ++++++G++ W+tIar ++ gRt++++k++w+++
  Glyma.20G199300.1.p  70 KGQITPQEESIIQELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114
                          5778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7711264IPR017930Myb domain
SuperFamilySSF466895.62E-2914111IPR009057Homeodomain-like
SMARTSM007171.1E-121666IPR001005SANT/Myb domain
PfamPF002499.0E-141764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-221870IPR009057Homeodomain-like
CDDcd001673.15E-91964No hitNo description
PROSITE profilePS5129423.46565119IPR017930Myb domain
SMARTSM007173.8E-1469117IPR001005SANT/Myb domain
PfamPF002491.0E-1370114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2571120IPR009057Homeodomain-like
CDDcd001671.91E-974115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAGNMGWGVI EEEGWRKGPW TSEEDRLLIL YVKFHGEGRW NSAARLAGLK RNGKSCRLRW  60
VNYLRPDLKK GQITPQEESI IQELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKMK  120
TPSDAAEKAR IHSSRRQHFQ QQQQQLKQQQ QQFQFNLDMK GIINLLEEND HRVPSISQEA  180
QEMASMYPNT SEHQGYFYSM FNVNDNDNNV SAPESSNEEI LWDGLWNLDD VLCNFNAASA  240
TSKASLHNLV SPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261711927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G199300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353810.0AC235381.1 Glycine max strain Williams 82 clone GM_WBb0111G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014628078.10.0myb-related protein 305
RefseqXP_028221407.10.0myb-related protein 305-like
TrEMBLA0A445F7U60.0A0A445F7U6_GLYSO; Myb-related protein 305
TrEMBLI1NHY70.0I1NHY7_SOYBN; Uncharacterized protein
STRINGGLYMA20G34140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-81myb domain protein 305