PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G207900.1.p
Common NameGLYMA_20G207900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 185aa    MW: 20950.6 Da    PI: 8.2578
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G207900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000713052123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C  C+ +F++   Lk H  +H
  Glyma.20G207900.1.p 30 FRCRLCNHVFPSYQALKAHFESH 52
                         89*****************8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.65E-51752No hitNo description
SMARTSM003550.00973052IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9123052IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MNISNFFNNS YQPSFFNSGQ DPRQNSQNGF RCRLCNHVFP SYQALKAHFE SHFTLENPAI  60
RNLYSSSHVN SQRGMIPNPL RPNFPRPMVM QETRNFVNMN FQAPPQQPMV MPQSRANLFP  120
LVIQHNVAAS QSLQGPPQAT QFVNNYVETA HLLAPPIHQG EMEVSPIDGT KPYIDLLDKP  180
IDNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G207900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358470.0AC235847.2 Glycine max clone GM_WBb0066C09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143246.12e-57hypothetical protein PHAVU_007G056300g
TrEMBLA0A0R0EE861e-131A0A0R0EE86_SOYBN; Uncharacterized protein
STRINGXP_007143246.19e-57(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1431235