PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G215700.1.p
Common NameGLYMA_20G215700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 194aa    MW: 21784.5 Da    PI: 8.262
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G215700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1880131256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +++GVr+++  g+W AeIrdps++g   r +lg++ taeeAa  +++a+ kl+g+
  Glyma.20G215700.1.p  80 KFRGVRQRP-LGKWSAEIRDPSQRG--VRLWLGTYNTAEEAALVYDNAAIKLRGP 131
                          89*******.8**********9876..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381233.6E-344189IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000182.01E-2979137No hitNo description
SMARTSM003802.8E-3480144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-2880137IPR001471AP2/ERF domain
PROSITE profilePS5103222.35280138IPR001471AP2/ERF domain
PfamPF008471.3E-1180130IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2180138IPR016177DNA-binding domain
PRINTSPR003672.4E-88192IPR001471AP2/ERF domain
PRINTSPR003672.4E-8104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAAPPTKYTH HTKLLIPPGP EEDPPKHPYP KLLRITVTDT DATDSSSDEE QTNFSTRHRH  60
RKLINEISIA RASDTRRGQK FRGVRQRPLG KWSAEIRDPS QRGVRLWLGT YNTAEEAALV  120
YDNAAIKLRG PHALTNFITP LLNEDTHNKF LFSPTSVLHV SENKVKVRGC SPVPDSVLFC  180
DDDWSSEFLT ASE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2277137262ATERF1
3gcc_A2e-2277137262ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.363880.0hypocotyl| leaf
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G215700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0900650.0BT090065.1 Soybean clone JCVI-FLGm-3F1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028220833.11e-142ethylene-responsive transcription factor ERF069-like
SwissprotQ9SUE32e-35CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A445F8J91e-141A0A445F8J9_GLYSO; Ethylene-responsive transcription factor CRF4
TrEMBLI1NIF51e-141I1NIF5_SOYBN; Uncharacterized protein
STRINGGLYMA20G35820.11e-142(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-30cytokinin response factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]