PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G219100.2.p
Common NameGLYMA_20G219100, LOC100790771
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 357aa    MW: 38788.6 Da    PI: 7.6279
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G219100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.68.9e-131135327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         +++C+++++tGtCk+G++CkF+H++
  Glyma.20G219100.2.p 11 QPECQYYLKTGTCKFGATCKFHHPK 35
                         799********************96 PP
2zf-CCCH38.91.5e-125781327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         +++C +++rtG+Ck+G++CkF+H++
  Glyma.20G219100.2.p 57 EPECTYYLRTGQCKFGNTCKFHHPQ 81
                         799********************97 PP
3zf-CCCH34.34e-11216242127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+f+ +tG Ck+G+ C+F+H++
  Glyma.20G219100.2.p 216 PGQPECQFYVKTGDCKFGAVCQFHHPR 242
                          5789*********************96 PP
4zf-CCCH382.7e-12263288227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++lC f++r+G+Ck+G++CkF H++
  Glyma.20G219100.2.p 263 GEPLCVFYSRYGICKFGPSCKFDHPM 288
                          579*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.1E-6835IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14836IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-101135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-61237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-51435IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9395482IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-65481IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-65782IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-105781IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-46080IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986215243IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5215242IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7217242IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.54E-5219245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5221243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802261289IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-7261288IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9263288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6264289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4266287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MIGEFPERIG QPECQYYLKT GTCKFGATCK FHHPKDQAGI AGRVALNILG YPLRPNEPEC  60
TYYLRTGQCK FGNTCKFHHP QPSNMMLSLR GSPVYPTVHS PTTPGQESYA GGITNWSRGS  120
YIPSPRWQGP SSYGPLILPQ GVVSVPGWSA YSGQMGSIST SDSPQQAMRN GQTYETSHQG  180
ELANAGSQGA YSQFRSGTVP VGFYTLQREN IFPERPGQPE CQFYVKTGDC KFGAVCQFHH  240
PRERLIPAPD CVLSPIGLPL RLGEPLCVFY SRYGICKFGP SCKFDHPMEI FSYNITTSPS  300
ADAPSRHLLG SSSGTAALNL SSEGLVESSS AKPRPLSLSE IRQIPSGDDN IDDDVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.138610.0cotyledon| flower| hypocotyl| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G219100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606434.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X2
RefseqXP_014628356.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0R0EEI70.0A0A0R0EEI7_SOYBN; Uncharacterized protein
STRINGGLYMA20G36140.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-136zinc finger protein 1