PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.20G234500.3.p

Common Name

GLYMA_20G234500

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 1115aa MW: 125562 Da PI: 9.2838

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G234500.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.6	1.8e-10	46	82	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e++++a +++G++ Wk++a+ + +R+ +++ Glyma.20G234500.3.p 46 QWSKEELERFYEAYRKYGKD-WKKVAAFIR-NRSTEMVE 82 6***************99.*****.*98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.87E-11	41	90	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.848	42	95	IPR017884	SANT domain
SMART	SM00717	1.1E-5	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-9	46	86	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-6	46	85	IPR009057	Homeodomain-like
CDD	cd00167	7.77E-7	47	81	No hit	No description
Pfam	PF06584	1.4E-32	626	726	IPR033471	DIRP domain
SMART	SM01135	3.6E-56	626	727	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1115 aa Download sequence Send to blast
MAPTRKSRSV NKRMSSSNDN SPEKDGINSN KNKLRKKKLT DKLGSQWSKE ELERFYEAYR 60 KYGKDWKKVA AFIRNRSTEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVMEGSDS 120 ERESNDAPGS QKPVKRKHEE VQLSVSKDQS HSIASRDDCL SILKKRRFDG MQLKPYAVGK 180 RTPRVPVYKK DDTENYVSPY RRSLKSTIDA NDDEVAHVVA LALTEAAHRG GSPQVSQTPS 240 RRVEQKSSPI QSLERKHQMS ETACAKFHDV SVDEEVLESS IESRGAENGE YARDNSSLMD 300 TEGISTVKVF QKRKIFYRKR ERVENVGNHQ LDDGGEACSG TEEGLSFSSL KEKVDIDVTN 360 EKLEKFSPKS QRKRNKKLFF GDETPALNAL QTLADLSLMM PISTMESESS IQFKGERMVA 420 DKNNKSALLE ATSTNHKRHQ LKHSAVPEIE VSTSKKSKIG KESTKDTNVL SESKGKLPFA 480 DTTWKKKRKS MGSKVANAKL DSYPSGPLKD EALDDDNKPV VKGKHTDQAF TLPKQLKTVK 540 SSESSFCSDQ KDLTVSTAEV PLLNEVSLPT KRSRRKMILQ RTSLPKEKSS DYILKSQPNK 600 YSTLKAKVSS CLASNMVRRW FIFEWFYSAI DYPWFAKREF MEYLNHVGLG NIPRLTRVEW 660 SVIKSSLGKP RRFSEHFLCE ERHKLEQYRE SVRKHYTELR TGIRDGLPTD LAKPLYVGQR 720 VIALHPKTRE IHDGSVLTVD YDKCRIQFDR PELGVEFVMD IDCMPLNPSD NMPEALRRHI 780 GSQKASFMNK EPQINGNSNF GGCEMHSFPV KAKVATVDNL CAQAGCAQPC KVTHHQAKEA 840 DIHAVSELKR ALDKKETLLM ELRSANSDIL ENQNGIECLK DSEVFKKHYA TVSDAMLQLR 900 QRNTYRGNSL PPWMKPQASF NVHDDLPGML DSSLTQELGS TVVQVIKGSR LRAHAMVDAA 960 FEALSLTKEG EDAFIKIGQA LDSINHQQLA SKSRLPVIRS QEQVNVNGSF YHLSHSTSGV 1020 SEPILNDPSV PKPHNYSDKF DTELPSDLIA SCVATLIMIQ TCTERQYPPA DVAQILDSAV 1080 TSLHPCCPQN LPIYREIQMC MGRIKTQMLA LIPT*

Sequence ? help Back to Top

Protein Sequence Length: 1115 aa Download sequence Send to blast

MAPTRKSRSV NKRMSSSNDN SPEKDGINSN KNKLRKKKLT DKLGSQWSKE ELERFYEAYR  60
KYGKDWKKVA AFIRNRSTEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVMEGSDS  120
ERESNDAPGS QKPVKRKHEE VQLSVSKDQS HSIASRDDCL SILKKRRFDG MQLKPYAVGK  180
RTPRVPVYKK DDTENYVSPY RRSLKSTIDA NDDEVAHVVA LALTEAAHRG GSPQVSQTPS  240
RRVEQKSSPI QSLERKHQMS ETACAKFHDV SVDEEVLESS IESRGAENGE YARDNSSLMD  300
TEGISTVKVF QKRKIFYRKR ERVENVGNHQ LDDGGEACSG TEEGLSFSSL KEKVDIDVTN  360
EKLEKFSPKS QRKRNKKLFF GDETPALNAL QTLADLSLMM PISTMESESS IQFKGERMVA  420
DKNNKSALLE ATSTNHKRHQ LKHSAVPEIE VSTSKKSKIG KESTKDTNVL SESKGKLPFA  480
DTTWKKKRKS MGSKVANAKL DSYPSGPLKD EALDDDNKPV VKGKHTDQAF TLPKQLKTVK  540
SSESSFCSDQ KDLTVSTAEV PLLNEVSLPT KRSRRKMILQ RTSLPKEKSS DYILKSQPNK  600
YSTLKAKVSS CLASNMVRRW FIFEWFYSAI DYPWFAKREF MEYLNHVGLG NIPRLTRVEW  660
SVIKSSLGKP RRFSEHFLCE ERHKLEQYRE SVRKHYTELR TGIRDGLPTD LAKPLYVGQR  720
VIALHPKTRE IHDGSVLTVD YDKCRIQFDR PELGVEFVMD IDCMPLNPSD NMPEALRRHI  780
GSQKASFMNK EPQINGNSNF GGCEMHSFPV KAKVATVDNL CAQAGCAQPC KVTHHQAKEA  840
DIHAVSELKR ALDKKETLLM ELRSANSDIL ENQNGIECLK DSEVFKKHYA TVSDAMLQLR  900
QRNTYRGNSL PPWMKPQASF NVHDDLPGML DSSLTQELGS TVVQVIKGSR LRAHAMVDAA  960
FEALSLTKEG EDAFIKIGQA LDSINHQQLA SKSRLPVIRS QEQVNVNGSF YHLSHSTSGV  1020
SEPILNDPSV PKPHNYSDKF DTELPSDLIA SCVATLIMIQ TCTERQYPPA DVAQILDSAV  1080
TSLHPCCPQN LPIYREIQMC MGRIKTQMLA LIPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	569	576	TKRSRRKM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.61131	0.0	leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G234500.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235362	0.0	AC235362.1 Glycine max strain Williams 82 clone GM_WBb0099N18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006606518.1	0.0	protein ALWAYS EARLY 2 isoform X4
TrEMBL	K7N588	0.0	K7N588_SOYBN; Uncharacterized protein
STRING	GLYMA20G37826.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Glyma.20G234500.3.p