PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G246400.4.p
Common NameGLYMA_20G246400, LOC100816123
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 421aa    MW: 47041.9 Da    PI: 7.6944
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G246400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.29.6e-10133175345
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Glyma.20G246400.4.p 133 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 175
                          568899************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.8E-8127178No hitNo description
PfamPF077165.8E-7131177IPR004827Basic-leucine zipper domain
SMARTSM003382.2E-6131194IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415133177IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-7135178No hitNo description
PROSITE patternPS000360138153IPR004827Basic-leucine zipper domain
PfamPF141445.0E-33217292IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MKREQQEGCR ALIHNCPIPM HDSVFDSLKV SSQTISRGPV EVDSFDKLPT SLNKNPLTSQ  60
TERQRLQLQK VQLSNLVSGD TEHQEESAMA DASPRTDIST DVDTDDKNPR FDRSQSLVAV  120
VSDSSDRSKD KSDQKTLRRL AQNREAARKS RLRKKAYVQQ LESSRLKLTQ LEQELQRARQ  180
QGIIISNSGD QAHSMSGNGA MAFDVEYARW LEEQNRQVNE LRAAVNSHAG DTELRMIIDG  240
IMAHYDEIFR LKADAAKADV FHLLSGMWKT PAERCFLWLG GFRSSELLKL LVNQLEPLTE  300
QQLVGITNLQ QSSQQAEDAL SQGMEALQQS LSETLSTGSL GSSGSSGNVA NYMGQMAMAM  360
GKLGTLEGFI KQADNLRQQT LQQIHRILTT RQSARALLAI HDYFSRLRAL SSLWLARPRD  420
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G246400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0933150.0BT093315.1 Soybean clone JCVI-FLGm-24E7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006605392.10.0bZIP transcription factor family protein isoform X2
RefseqXP_006605393.10.0bZIP transcription factor family protein isoform X2
RefseqXP_014627741.10.0bZIP transcription factor family protein isoform X2
RefseqXP_028222403.10.0transcription factor TGA2-like isoform X2
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLK7N5H30.0K7N5H3_SOYBN; Uncharacterized protein
STRINGGLYMA20G39050.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-148TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]