PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U001100.1.p
Common NameGLYMA_U001100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 124aa    MW: 13361.7 Da    PI: 4.5689
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U001100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000321335123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ykC+ Cgk Fs+   L  H ++H
  Glyma.U001100.1.p 13 YKCGACGKIFSTFQGLGGHRSVH 35
                       9***********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.24E-61239No hitNo description
Gene3DG3DSA:3.30.160.601.9E-41338IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.9051340IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MAKEKENEKV GGYKCGACGK IFSTFQGLGG HRSVHKGKNN NTVIIMDESN HNHSEALGDQ  60
ENNSSSSSNM HKVDEAPLPT DETRVNEEIP ETPPLLADEA CQSSSGVKKL DFDLNELPCA  120
MED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U001100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219809.17e-82uncharacterized protein LOC114401498
TrEMBLA0A0R0EC689e-86A0A0R0EC68_SOYBN; Uncharacterized protein
STRINGGLYMA13G04041.13e-46(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15181913
Representative plantOGRP1249135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.16e-08C2H2 family protein