PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.U009700.1.p

Common Name

GLYMA_U009700, LOC102670152

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YB

Protein Properties

Length: 109aa MW: 12184.9 Da PI: 9.0229

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.U009700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	140	6.1e-44	23	108	2	87
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 reqdrflPianvsrimkk+lPan kisk +ketvqe vs isf+ ++as+kcqrekrktingddllwa++tlGfedy+eplk yl Glyma.U009700.1.p 23 REQDRFLPIANVSRIMKKTLPANVKISKYTKETVQEYVSALISFIIDKASNKCQREKRKTINGDDLLWAMTTLGFEDYLEPLKGYL 108 89*********************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.3E-40	22	108	IPR009072	Histone-fold
SuperFamily	SSF47113	2.33E-31	25	108	IPR009072	Histone-fold
Pfam	PF00808	3.7E-20	28	92	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.7E-13	56	74	No hit	No description
PRINTS	PR00615	1.7E-13	75	93	No hit	No description
PRINTS	PR00615	1.7E-13	94	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MADSDNDSDG AHNSGKGVKL LSREQDRFLP IANVSRIMKK TLPANVKISK YTKETVQEYV 60 SALISFIIDK ASNKCQREKR KTINGDDLLW AMTTLGFEDY LEPLKGYL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-37	17	108	1	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.29090	1e-119	cotyledon

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.U009700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014628579.2	1e-75	LOW QUALITY PROTEIN: nuclear transcription factor Y subunit B-3
Swissprot	O23310	5e-53	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
Swissprot	Q75IZ7	1e-52	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A445I3Q8	2e-70	A0A445I3Q8_GLYSO; Uncharacterized protein
STRING	GLYMA11G18190.1	3e-75	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150
Representative plant	OGRP168	17	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	2e-55	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Glyma.U009700.1.p
Entrez Gene	102670152

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]