PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U020900.1.p
Common NameGLYMA_U020900, LOC100789504
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 205aa    MW: 22159.1 Da    PI: 4.9213
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U020900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.35.5e-43371361100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrrkCa++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a
  Glyma.U020900.1.p  37 PCAACKILRRKCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQA 128
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la+++ e
  Glyma.U020900.1.p 129 QLAKAQGE 136
                        ***99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.48336137IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-4337134IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MESSDTYTPT SSAPLSHSPS NSSSSSPPPP PTVVMSPCAA CKILRRKCAE KCVLAPYFPP  60
TEPAKFTIAH RVFGASNIIK FLQELPESQR ADAVTSMVYE ASARIRDPVY GCAGAICQLQ  120
KQVNELQAQL AKAQGELVNM QLQQANLVAL ICMEMAQSPQ ESPQQSVDNF ISTPPQSGGA  180
YQSGMNFFED NTSLNSLWEQ PLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-423613910113LOB family transfactor Ramosa2.1
5ly0_B2e-423613910113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.365590.0cotyledon| meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U020900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0971750.0BT097175.1 Soybean clone JCVI-FLGm-21N19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538040.11e-149LOB domain-containing protein 1
RefseqXP_028187222.11e-149LOB domain-containing protein 1-like
SwissprotQ9LQR03e-77LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A445I1R41e-148A0A445I1R4_GLYSO; LOB domain-containing protein 1
STRINGGLYMA11G15810.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-79LOB domain-containing protein 1