PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.U025800.1.p

Common Name

GLYMA_U025800, LOC100787416

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SBP

Protein Properties

Length: 191aa MW: 21416.7 Da PI: 9.1547

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.U025800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	136.7	7e-43	70	146	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+e+C adl++ak+yhrrhkvCe+hskapvv+v+gl+qrfCqqCsrfh+l efDe+krsCrrrLa+hnerrrk+++ Glyma.U025800.1.p 70 CQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKTNP 146 **************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.1E-36	62	131	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.753	67	144	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.4E-40	68	148	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.5E-32	70	143	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MEGRRVERKK TLFERVRKNS TVDEEVENEG EEEDESGVNI TEEEKKIGVS SGGGRRGSSG 60 GGGGVSPPSC QAERCGADLT DAKRYHRRHK VCEFHSKAPV VVVAGLRQRF CQQCSRFHDL 120 AEFDESKRSC RRRLAGHNER RRKTNPEAAN EGNSKGQHPK ETTHCRLADE RGRIQMNLTG 180 SSEYKSFNIR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-37	57	143	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.9448	0.0	pod

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.U025800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235817	1e-146	AC235817.2 Glycine max clone GM_WBa0006O01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003540122.1	1e-136	squamosa promoter-binding protein 1
Refseq	XP_028193727.1	1e-136	squamosa promoter-binding protein 1-like
Swissprot	Q38741	4e-44	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A0B2PDS3	1e-135	A0A0B2PDS3_GLYSO; Squamosa promoter-binding protein 1
TrEMBL	I1LT75	1e-135	I1LT75_SOYBN; Uncharacterized protein
STRING	GLYMA12G27330.1	1e-136	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153
Representative plant	OGRP97	17	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	2e-40	squamosa promoter binding protein-like 4

Link Out ? help Back to Top
Phytozome	Glyma.U025800.1.p
Entrez Gene	100787416

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]