PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U028600.3.p
Common NameGLYMA_U028600, LOC100807610
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 456aa    MW: 50083.4 Da    PI: 8.0078
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U028600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.7e-2479123145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  Glyma.U028600.3.p  79 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 123
                        79****************************************985 PP
2QLQ55.32e-191041132
                QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLl 32
                       ++FT++Q+++L++Q+l+yKy+ +n+PvP +L+
  Glyma.U028600.3.p 10 GPFTPSQWMELEHQALIYKYITSNVPVPTHLI 41
                       59****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-81046IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.3E-141141IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.3421146IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.84779123IPR014977WRC domain
PfamPF088798.4E-2180122IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MHGALAGVRG PFTPSQWMEL EHQALIYKYI TSNVPVPTHL IPIRKALDSL GFCNFSTGLL  60
RPNALGWGGF HLGFSNNTDP EPGRCRRTDG KKWRCSRDAV VDQKYCERHM NRGRHRSRKP  120
VEGQLGHALT TTTTTNTPNA SSNSTVVPRN TTTTTTFAHN NVHHPLPPHS SQANTINRMF  180
TSNKENNSTS ERLQDPALPM LPPTLELKPK ENNPFMIHKH HIPADEYSRN SNEFGLVTSD  240
SLLNPTQKRS FTSSQKDDSE SQQQHSLRHF IDDSPKPQSH NHHHHHHSSS IWPELDSMQS  300
DRTQLSISIP ISSSDFMSFT TSSPSNEKLT LSPLGHSREL DPIQMELGMG SGASNEANTR  360
QANWIPITWE SSMGGPLGEV LNLSNNSNAS DQCGKNNNTS ALNLMKDGWD NNPPLGSSPT  420
GVLQKSAFGS LSNSSAGSSP RAENNKEGAT LCNAL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.350500.0pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U028600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014628641.10.0growth-regulating factor 1
RefseqXP_028201308.10.0growth-regulating factor 1-like
TrEMBLA0A445H3P40.0A0A445H3P4_GLYSO; Growth-regulating factor 1 isoform A
TrEMBLK7M5R80.0K7M5R8_SOYBN; Uncharacterized protein
STRINGGLYMA14G10100.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.15e-79growth-regulating factor 1