PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U035800.1.p
Common NameLOC100809363
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 194aa    MW: 22100.7 Da    PI: 10.0095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U035800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-071969654
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHH CS
                HLH  6 nerErrRRdriNsafeeLrellPkaskapskK..lsKaeiLekAveYIksL 54
                       + +Er+RR +++s  ++L +l+P++ k+ ++K  l   + L +A +YI+++
  Glyma.U035800.1.p 19 KTIERNRRTHMKSLCHQLSSLIPPNLKPVKPKlmLGLQDQLDLAARYIRQM 69
                       689*********************768888885566779999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.46E-41174No hitNo description
PROSITE profilePS508889.8071369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-71787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-91786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-41969IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MMKKRVASTS NESSKLDRKT IERNRRTHMK SLCHQLSSLI PPNLKPVKPK LMLGLQDQLD  60
LAARYIRQMT ERVEKLKRQK EQAMSNQSND GRKMFNNNVE SKLPILELRD LGSGIEVILV  120
TGLNKTFMLY EVISVLEEEG AEVVTASFST VGDKIFYVVH AQAKISRVGV ETTRVYNRLQ  180
EFIVPPEIWP EDV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.271490.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U035800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527022.11e-141transcription factor bHLH168
TrEMBLA0A367GKN31e-140A0A367GKN3_SOYBN; Uncharacterized protein
STRINGGLYMA06G19490.11e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-26bHLH family protein