PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U038900.2.p
Common NameGLYMA_U038900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 310aa    MW: 34459 Da    PI: 6.1665
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U038900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.4e-0829512346
                       -HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                       +W+ Ia+ ++ gRt++++k++w++
  Glyma.U038900.2.p 29 RWSVIAAQLP-GRTDNDIKNYWNT 51
                       6*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.62E-82658IPR009057Homeodomain-like
CDDcd001673.20E-62753No hitNo description
Gene3DG3DSA:1.10.10.608.8E-122857IPR009057Homeodomain-like
PfamPF002492.1E-62951IPR001005SANT/Myb domain
PROSITE profilePS500906.3192953IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MVVSPKKKTT LFAASMSVLE ADNTCCHHRW SVIAAQLPGR TDNDIKNYWN TRLKKKLLGK  60
HRREPRNRGN YNSVKQEIDV NRGSSNDGDS SSLSLLQENG NTTQQQQQPC WPQNINNMPV  120
LPLQVPLPYT NQGPCFNDQD SIKKLLIKLG GRFSGDYYHP TLDGLNLEFS SDGQQIYQEQ  180
VHVGSSSAAA ACISSTINNN NEVQFAQTDQ YSGVHNLVQG QGGNFTPSFE EMVSSSNYPD  240
GLEFLYNEDM IDHRIIESPT TTVTATITTN WGETSTPLYH HHNSIASNYQ SQGVTQECAL  300
QYFSYPGAQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U038900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556962.11e-178transcription factor RAX3
RefseqXP_028209798.11e-178transcription factor RAX3-like
TrEMBLK7K0T70.0K7K0T7_SOYBN; Uncharacterized protein
STRINGGLYMA0041S00310.21e-177(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.11e-12myb domain protein 68