PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G008100.1
Common NameB456_001G008100, LOC105788779
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 245aa    MW: 26930.6 Da    PI: 4.5534
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G008100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-1850100155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Gorai.001G008100.1  50 PVYRGVRMRA-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 100
                         68*****998.**********854...59**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1250100IPR001471AP2/ERF domain
PROSITE profilePS5103223.02451108IPR001471AP2/ERF domain
SMARTSM003802.0E-3651114IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-2151109IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-3151109IPR001471AP2/ERF domain
CDDcd000181.09E-3152110No hitNo description
PRINTSPR003674.6E-105263IPR001471AP2/ERF domain
PRINTSPR003674.6E-107490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGDSLNSETE SSTVSNNSSP STSPYGKRLG TELIPDPKRE KRPRDNSKHP VYRGVRMRAW  60
GKWVSEIREP RKKNRIWLGT FSTPEMAARA HDVAALSIKG NSAILNFPEL AESLPRPASN  120
SPRDVQAAAA KAAAMEFLSN KNNSVDDATS SSDSTSSSSN VDDMSSTPEE LSEIVELPSL  180
GTSYESAESG NEFVYVDRFD GWLFNPCGIP WYYEENCGYF GDETSMQIQD SLITNGFSPL  240
LWDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1946109973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7801870.0KP780187.1 Gossypium hirsutum C-repeat binding factor 4 (CBF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471309.11e-180PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD34e-65DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D2PRS41e-179A0A0D2PRS4_GOSRA; Uncharacterized protein
STRINGGorai.001G008100.11e-180(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-59ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]